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Gene : CUL3B A. thaliana

Gene ID  ? AT1G69670
Brief Description  cullin 3B  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? cullin 3B (CUL3B); CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Cullin homology (InterPro:IPR016158), Cullin protein, neddylation domain (InterPro:IPR019559), Cullin, N-terminal (InterPro:IPR001373), Cullin repeat-like-containing domain (InterPro:IPR016159); BEST Arabidopsis thaliana protein match is: cullin 3 (TAIR:AT1G26830.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? cullin, putative, contains similarity to Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from (Homo sapiens); contains Pfam profile PF00888: Cullin family. Interacts with members of AtBPM family and RBX1 suggesting it is part of an E3 ligase complex involved in RUB modification.  Source: TAIR, Jun 30, 2015.
Name  ? cullin 3B
  • synonyms:
  • ATCUL3B,
  • ARABIDOPSIS THALIANA CULLIN 3B

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5 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
AtCUL3a and AtCUL3b can assemble in Arabidopsis with BTB/POZ-MATH and AtRBX1 proteins to form functional E3 ligases. [CUL3b] 15618422
CUL3a and CUL3b are essential for plant development [CUL3b] 15749712
Arabidopsis CUL3B gene is essential for normal embryogenesis. 16045478
work highlights that CUL3 is essential for the normal division and organisation of the root stem cell niche and columella root cap cells 19132085
Data show that CUL3 and BPM proteins assemble in planta with WRI1. 23792371

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G69670 0.5kb upstream 0.5kb upstream 3310   true Chr1: 26201986-26205295
AT1G69670 0.5kb upstream 0.5kb upstream 500   false Chr1: 26204796-26205295
AT1G69670 0.5kb downstream 0.5kb downstream 3310   true Chr1: 26201486-26204795
AT1G69670 0.5kb downstream 0.5kb downstream 500   false Chr1: 26201486-26201985
AT1G69670 1.0kb upstream 1.0kb upstream 3810   true Chr1: 26201986-26205795
AT1G69670 1.0kb upstream 1.0kb upstream 1000   false Chr1: 26204796-26205795
AT1G69670 1.0kb downstream 1.0kb downstream 3810   true Chr1: 26200986-26204795
AT1G69670 1.0kb downstream 1.0kb downstream 1000   false Chr1: 26200986-26201985
AT1G69670 3.0kb upstream 3.0kb upstream 5810   true Chr1: 26201986-26207795
AT1G69670 3.0kb upstream 3.0kb upstream 3000   false Chr1: 26204796-26207795
AT1G69670 3.0kb downstream 3.0kb downstream 5810   true Chr1: 26198986-26204795
AT1G69670 3.0kb downstream 3.0kb downstream 3000   false Chr1: 26198986-26201985

Proteins

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Function

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1 Pathways

Data Source: KEGG

Identifier Name
04120 Ubiquitin mediated proteolysis

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Expression

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Interactions

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Homology

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12 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139