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Gene : ATG13 A. thaliana

Gene ID  ? AT3G49590
Brief Description  Autophagy-related protein 13  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Autophagy-related protein 13; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Autophagy-related protein 13 (InterPro:IPR018731); BEST Arabidopsis thaliana protein match is: Autophagy-related protein 13 (TAIR:AT3G18770.1).  Source: TAIR, Jun 30, 2015.
Name  ? autophagy-related 13

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
The ATG1/13 complex in Arabidopsis thaliana is both a regulator and a target of autophagy. 21984698

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G49590 0.5kb upstream 0.5kb upstream 3461   true Chr3: 18376909-18380369
AT3G49590 0.5kb upstream 0.5kb upstream 500   false Chr3: 18376909-18377408
AT3G49590 0.5kb downstream 0.5kb downstream 3461   true Chr3: 18377409-18380869
AT3G49590 0.5kb downstream 0.5kb downstream 500   false Chr3: 18380370-18380869
AT3G49590 1.0kb upstream 1.0kb upstream 3961   true Chr3: 18376409-18380369
AT3G49590 1.0kb upstream 1.0kb upstream 1000   false Chr3: 18376409-18377408
AT3G49590 1.0kb downstream 1.0kb downstream 3961   true Chr3: 18377409-18381369
AT3G49590 1.0kb downstream 1.0kb downstream 1000   false Chr3: 18380370-18381369
AT3G49590 3.0kb upstream 3.0kb upstream 5961   true Chr3: 18374409-18380369
AT3G49590 3.0kb upstream 3.0kb upstream 3000   false Chr3: 18374409-18377408
AT3G49590 3.0kb downstream 3.0kb downstream 5961   true Chr3: 18377409-18383369
AT3G49590 3.0kb downstream 3.0kb downstream 3000   false Chr3: 18380370-18383369

Proteins

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Function

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1 Pathways

Data Source: KEGG

Identifier Name
04140 Regulation of autophagy

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Expression

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Interactions

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Homology

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Stocks

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139