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Gene : ADT6 A. thaliana

Gene ID  ? AT1G08250
Brief Description  arogenate dehydratase 6  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? arogenate dehydratase 6 (ADT6); FUNCTIONS IN: arogenate dehydratase activity, prephenate dehydratase activity; INVOLVED IN: L-phenylalanine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prephenate dehydratase (InterPro:IPR001086), Prephenate dehydratase, conserved site (InterPro:IPR018528); BEST Arabidopsis thaliana protein match is: prephenate dehydratase 1 (TAIR:AT2G27820.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a plastid-localized arogenate dehydratase involved in phenylalanine biosynthesis. Although this enzyme has sequence similarity to prephenate dehydratases, it is 98 times more active with arogenate than prephenate in enzymatic assays.  Source: TAIR, Jun 30, 2015.
Name  ? arogenate dehydratase 6
  • synonyms:
  • AtADT6,
  • Arabidopsis thaliana arogenate dehydratase 6

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G08250 0.5kb upstream 0.5kb upstream 2334   true Chr1: 2588776-2591109
AT1G08250 0.5kb upstream 0.5kb upstream 500   false Chr1: 2590610-2591109
AT1G08250 0.5kb downstream 0.5kb downstream 2334   true Chr1: 2588276-2590609
AT1G08250 0.5kb downstream 0.5kb downstream 500   false Chr1: 2588276-2588775
AT1G08250 1.0kb upstream 1.0kb upstream 2834   true Chr1: 2588776-2591609
AT1G08250 1.0kb upstream 1.0kb upstream 1000   false Chr1: 2590610-2591609
AT1G08250 1.0kb downstream 1.0kb downstream 2834   true Chr1: 2587776-2590609
AT1G08250 1.0kb downstream 1.0kb downstream 1000   false Chr1: 2587776-2588775
AT1G08250 3.0kb upstream 3.0kb upstream 4834   true Chr1: 2588776-2593609
AT1G08250 3.0kb upstream 3.0kb upstream 3000   false Chr1: 2590610-2593609
AT1G08250 3.0kb downstream 3.0kb downstream 4834   true Chr1: 2585776-2590609
AT1G08250 3.0kb downstream 3.0kb downstream 3000   false Chr1: 2585776-2588775

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4 Pathways

Data Source: KEGG

Identifier Name
01100 Metabolic pathways
01110 Biosynthesis of secondary metabolites
01230 Biosynthesis of amino acids
00400 Phenylalanine, tyrosine and tryptophan biosynthesis

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Expression

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0