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Gene : CYSB A. thaliana

Gene ID  ? AT3G12490
Brief Description  cystatin B  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? cystatin B (CYSB); FUNCTIONS IN: cysteine-type endopeptidase inhibitor activity, cobalt ion binding; INVOLVED IN: response to abiotic stimulus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Proteinase inhibitor I25, cystatin, conserved site (InterPro:IPR018073), Proteinase inhibitor I25, cystatin (InterPro:IPR000010), Proteinase inhibitor I25, cystatin, conserved region (InterPro:IPR020381); BEST Arabidopsis thaliana protein match is: Cystatin/monellin family protein (TAIR:AT5G05110.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a protein with cysteine proteinase inhibitor activity. Overexpression increases tolerance to abiotic stressors (i.e.salt,osmotic, cold stress).  Source: TAIR, Jun 30, 2015.
Name  ? cystatin B
  • synonyms:
  • ATCYS6,
  • ARABIDOPSIS THALIANA PHYTOCYSTATIN 6,
  • cystatin B,
  • ATCYSB

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2 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
Data suggests that AtCYS6 expression is enhanced by the germination inhibitory phytohormone ABA and that it participates in the control of germination rate and seedling growth by inhibiting the activity of stored cysteine proteinases. [AtCYS6] 19690865
The interaction between AtCYSb and AtCaN2 AtCYSb regulates nucleic acid degradation in cells 24076026

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G12490 0.5kb upstream 0.5kb upstream 2020   true Chr3: 3960401-3962420
AT3G12490 0.5kb upstream 0.5kb upstream 500   false Chr3: 3961921-3962420
AT3G12490 0.5kb downstream 0.5kb downstream 2020   true Chr3: 3959901-3961920
AT3G12490 0.5kb downstream 0.5kb downstream 500   false Chr3: 3959901-3960400
AT3G12490 1.0kb upstream 1.0kb upstream 2520   true Chr3: 3960401-3962920
AT3G12490 1.0kb upstream 1.0kb upstream 1000   false Chr3: 3961921-3962920
AT3G12490 1.0kb downstream 1.0kb downstream 2520   true Chr3: 3959401-3961920
AT3G12490 1.0kb downstream 1.0kb downstream 1000   false Chr3: 3959401-3960400
AT3G12490 3.0kb upstream 3.0kb upstream 4520   true Chr3: 3960401-3964920
AT3G12490 3.0kb upstream 3.0kb upstream 3000   false Chr3: 3961921-3964920
AT3G12490 3.0kb downstream 3.0kb downstream 4520   true Chr3: 3957401-3961920
AT3G12490 3.0kb downstream 3.0kb downstream 3000   false Chr3: 3957401-3960400

Proteins

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0 Pathways

Data Source: KEGG

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139