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Gene : TGG3 A. thaliana

Gene ID  ? AT5G48375
Brief Description  thioglucoside glucosidase 3  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? thioglucoside glucosidase 3 (TGG3); FUNCTIONS IN: thioglucosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: petal, guard cell, stamen; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glucoside glucohydrolase 2 (TAIR:AT5G25980.2).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Is a myrosinase pseudogene that codes for a truncated and frameshifted protein. Although TGG3 apparently is a pseudogene, its mRNA is expressed specifically in stamen and petal according to RT-PCR analysis. Western analysis shows no band of the size expected for a TGG3 protein.  Source: TAIR, Jun 30, 2015.
Name  ? thioglucoside glucosidase 3
  • synonyms:
  • BETA GLUCOSIDASE 39,
  • BGLU39

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G48375 0.5kb upstream 0.5kb upstream 3081   true Chr5: 19601303-19604383
AT5G48375 0.5kb upstream 0.5kb upstream 500   false Chr5: 19603884-19604383
AT5G48375 0.5kb downstream 0.5kb downstream 3081   true Chr5: 19600803-19603883
AT5G48375 0.5kb downstream 0.5kb downstream 500   false Chr5: 19600803-19601302
AT5G48375 1.0kb upstream 1.0kb upstream 3581   true Chr5: 19601303-19604883
AT5G48375 1.0kb upstream 1.0kb upstream 1000   false Chr5: 19603884-19604883
AT5G48375 1.0kb downstream 1.0kb downstream 3581   true Chr5: 19600303-19603883
AT5G48375 1.0kb downstream 1.0kb downstream 1000   false Chr5: 19600303-19601302
AT5G48375 3.0kb upstream 3.0kb upstream 5581   true Chr5: 19601303-19606883
AT5G48375 3.0kb upstream 3.0kb upstream 3000   false Chr5: 19603884-19606883
AT5G48375 3.0kb downstream 3.0kb downstream 5581   true Chr5: 19598303-19603883
AT5G48375 3.0kb downstream 3.0kb downstream 3000   false Chr5: 19598303-19601302

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1 Pathways

Data Source: KEGG

Identifier Name
00380 Tryptophan metabolism

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139