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Gene : AT4G08780 A. thaliana

Gene ID  ? AT4G08780
Brief Description  Peroxidase superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: oxidation reduction, response to oxidative stress; LOCATED IN: vacuole; EXPRESSED IN: embryo, hypocotyl, root, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT4G08770.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT4G08780 0.5kb upstream 0.5kb upstream 4686   true Chr4: 5603605-5608290
AT4G08780 0.5kb upstream 0.5kb upstream 500   false Chr4: 5603605-5604104
AT4G08780 0.5kb downstream 0.5kb downstream 4686   true Chr4: 5604105-5608790
AT4G08780 0.5kb downstream 0.5kb downstream 500   false Chr4: 5608291-5608790
AT4G08780 1.0kb upstream 1.0kb upstream 5186   true Chr4: 5603105-5608290
AT4G08780 1.0kb upstream 1.0kb upstream 1000   false Chr4: 5603105-5604104
AT4G08780 1.0kb downstream 1.0kb downstream 5186   true Chr4: 5604105-5609290
AT4G08780 1.0kb downstream 1.0kb downstream 1000   false Chr4: 5608291-5609290
AT4G08780 3.0kb upstream 3.0kb upstream 7186   true Chr4: 5601105-5608290
AT4G08780 3.0kb upstream 3.0kb upstream 3000   false Chr4: 5601105-5604104
AT4G08780 3.0kb downstream 3.0kb downstream 7186   true Chr4: 5604105-5611290
AT4G08780 3.0kb downstream 3.0kb downstream 3000   false Chr4: 5608291-5611290

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3 Pathways

Data Source: KEGG

Identifier Name
01100 Metabolic pathways
01110 Biosynthesis of secondary metabolites
00940 Phenylpropanoid biosynthesis

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Expression

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0