help  | faq  | software  | ARAPORT

Gene : AXS2 A. thaliana

Gene ID  ? AT1G08200
Brief Description  UDP-D-apiose/UDP-D-xylose synthase 2  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? UDP-D-apiose/UDP-D-xylose synthase 2 (AXS2); FUNCTIONS IN: UDP-glucuronate decarboxylase activity; INVOLVED IN: nucleotide-sugar biosynthetic process; LOCATED IN: apoplast, cytoplasm; EXPRESSED IN: fruit, guard cell, cultured cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: UDP-D-apiose/UDP-D-xylose synthase 1 (TAIR:AT2G27860.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a putative UDP-D-apiose/UPD-D-xylose synthetase.  Source: TAIR, Jun 30, 2015.
Name  ? UDP-D-apiose/UDP-D-xylose synthase 2

Locus History Displayer

Publication Counts Displayer

0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

Sequence Feature Displayer

Gene Structure Displayer

J Browse Displayer

Overlapping Features Displayer

12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G08200 0.5kb upstream 0.5kb upstream 3527   true Chr1: 2573818-2577344
AT1G08200 0.5kb upstream 0.5kb upstream 500   false Chr1: 2576845-2577344
AT1G08200 0.5kb downstream 0.5kb downstream 3527   true Chr1: 2573318-2576844
AT1G08200 0.5kb downstream 0.5kb downstream 500   false Chr1: 2573318-2573817
AT1G08200 1.0kb upstream 1.0kb upstream 4027   true Chr1: 2573818-2577844
AT1G08200 1.0kb upstream 1.0kb upstream 1000   false Chr1: 2576845-2577844
AT1G08200 1.0kb downstream 1.0kb downstream 4027   true Chr1: 2572818-2576844
AT1G08200 1.0kb downstream 1.0kb downstream 1000   false Chr1: 2572818-2573817
AT1G08200 3.0kb upstream 3.0kb upstream 6027   true Chr1: 2573818-2579844
AT1G08200 3.0kb upstream 3.0kb upstream 3000   false Chr1: 2576845-2579844
AT1G08200 3.0kb downstream 3.0kb downstream 6027   true Chr1: 2570818-2576844
AT1G08200 3.0kb downstream 3.0kb downstream 3000   false Chr1: 2570818-2573817

Proteins

Protein Displayer


Function

Gene Ontology Displayer

2 Pathways

Data Source: KEGG

Identifier Name
01100 Metabolic pathways
00520 Amino sugar and nucleotide sugar metabolism

Gene --> Ontology term

Gene --> Pathways


Expression

Plant Ontology Displayer

Bar Efp Browser Displayer

Array Expression

RNA-seq Expression

Co-expression

Save / Export

 

 

 

 



Interactions

Cytoscape Network Displayer


Homology

Homologue Displayer

Phytomine Ortholog Displayer


Stocks

Alelle Table Displayer

Stock Gene Table Displayer


 

Other

10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from InterPro    
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139