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Gene : AT4G16680 A. thaliana

Gene ID  ? AT4G16680
Brief Description  P-loop containing nucleoside triphosphate hydrolases superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: RNA helicase activity, helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, sepal, male gametophyte, carpel, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RNA helicase family protein (TAIR:AT1G32490.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT4G16680 0.5kb upstream 0.5kb upstream 4834   true Chr4: 9387393-9392226
AT4G16680 0.5kb upstream 0.5kb upstream 500   false Chr4: 9391727-9392226
AT4G16680 0.5kb downstream 0.5kb downstream 4834   true Chr4: 9386893-9391726
AT4G16680 0.5kb downstream 0.5kb downstream 500   false Chr4: 9386893-9387392
AT4G16680 1.0kb upstream 1.0kb upstream 5334   true Chr4: 9387393-9392726
AT4G16680 1.0kb upstream 1.0kb upstream 1000   false Chr4: 9391727-9392726
AT4G16680 1.0kb downstream 1.0kb downstream 5334   true Chr4: 9386393-9391726
AT4G16680 1.0kb downstream 1.0kb downstream 1000   false Chr4: 9386393-9387392
AT4G16680 3.0kb upstream 3.0kb upstream 7334   true Chr4: 9387393-9394726
AT4G16680 3.0kb upstream 3.0kb upstream 3000   false Chr4: 9391727-9394726
AT4G16680 3.0kb downstream 3.0kb downstream 7334   true Chr4: 9384393-9391726
AT4G16680 3.0kb downstream 3.0kb downstream 3000   false Chr4: 9384393-9387392

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1 Pathways

Data Source: KEGG

Identifier Name
03040 Spliceosome

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0