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Gene : HEMA3 A. thaliana

Gene ID  ? AT2G31250
Brief Description  Glutamyl-tRNA reductase family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? HEMA3; FUNCTIONS IN: glutamyl-tRNA reductase activity, NADP or NADPH binding, binding, shikimate 5-dehydrogenase activity, catalytic activity; INVOLVED IN: porphyrin biosynthetic process; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: flower, pollen tube; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase (InterPro:IPR006151), Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, conserved site (InterPro:IPR018214), Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, C-terminal (InterPro:IPR015896), NAD(P)-binding domain (InterPro:IPR016040), Tetrapyrrole biosynthesis, glutamyl-tRNA reductase (InterPro:IPR000343), Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal (InterPro:IPR015895); BEST Arabidopsis thaliana protein match is: Glutamyl-tRNA reductase family protein (TAIR:AT1G09940.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT2G31250 0.5kb upstream 0.5kb upstream 2477   true Chr2: 13319621-13322097
AT2G31250 0.5kb upstream 0.5kb upstream 500   false Chr2: 13321598-13322097
AT2G31250 0.5kb downstream 0.5kb downstream 2477   true Chr2: 13319121-13321597
AT2G31250 0.5kb downstream 0.5kb downstream 500   false Chr2: 13319121-13319620
AT2G31250 1.0kb upstream 1.0kb upstream 2977   true Chr2: 13319621-13322597
AT2G31250 1.0kb upstream 1.0kb upstream 1000   false Chr2: 13321598-13322597
AT2G31250 1.0kb downstream 1.0kb downstream 2977   true Chr2: 13318621-13321597
AT2G31250 1.0kb downstream 1.0kb downstream 1000   false Chr2: 13318621-13319620
AT2G31250 3.0kb upstream 3.0kb upstream 4977   true Chr2: 13319621-13324597
AT2G31250 3.0kb upstream 3.0kb upstream 3000   false Chr2: 13321598-13324597
AT2G31250 3.0kb downstream 3.0kb downstream 4977   true Chr2: 13316621-13321597
AT2G31250 3.0kb downstream 3.0kb downstream 3000   false Chr2: 13316621-13319620

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3 Pathways

Data Source: KEGG

Identifier Name
01100 Metabolic pathways
01110 Biosynthesis of secondary metabolites
00860 Porphyrin and chlorophyll metabolism

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0