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Gene : UKL3 A. thaliana

Gene ID  ? AT1G55810
Brief Description  uridine kinase-like 3  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? uridine kinase-like 3 (UKL3); FUNCTIONS IN: uracil phosphoribosyltransferase activity, phosphotransferase activity, alcohol group as acceptor, kinase activity, ATP binding; INVOLVED IN: biosynthetic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribulokinase/uridine kinase (InterPro:IPR006083), Uridine kinase (InterPro:IPR000764); BEST Arabidopsis thaliana protein match is: uridine kinase-like 4 (TAIR:AT4G26510.2).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? One of the homologous genes predicted to encode proteins with UPRT domains (Uracil phosphoribosyltransferase). Five of these genes (At5g40870, At3g27190, At1g55810, At4g26510 and At3g27440) show a high level of identity, and are annotated as also containing a N-terminal uracil kinase (UK) domain. These genes are referred to as UKL1 (UK-like 1), UKL2, UKL3, UKL4 and UKL5, respectively.  Source: TAIR, Jun 30, 2015.
Name  ? uridine kinase-like 3

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G55810 0.5kb upstream 0.5kb upstream 4281   true Chr1: 20860007-20864287
AT1G55810 0.5kb upstream 0.5kb upstream 500   false Chr1: 20860007-20860506
AT1G55810 0.5kb downstream 0.5kb downstream 4281   true Chr1: 20860507-20864787
AT1G55810 0.5kb downstream 0.5kb downstream 500   false Chr1: 20864288-20864787
AT1G55810 1.0kb upstream 1.0kb upstream 4781   true Chr1: 20859507-20864287
AT1G55810 1.0kb upstream 1.0kb upstream 1000   false Chr1: 20859507-20860506
AT1G55810 1.0kb downstream 1.0kb downstream 4781   true Chr1: 20860507-20865287
AT1G55810 1.0kb downstream 1.0kb downstream 1000   false Chr1: 20864288-20865287
AT1G55810 3.0kb upstream 3.0kb upstream 6781   true Chr1: 20857507-20864287
AT1G55810 3.0kb upstream 3.0kb upstream 3000   false Chr1: 20857507-20860506
AT1G55810 3.0kb downstream 3.0kb downstream 6781   true Chr1: 20860507-20867287
AT1G55810 3.0kb downstream 3.0kb downstream 3000   false Chr1: 20864288-20867287

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2 Pathways

Data Source: KEGG

Identifier Name
01100 Metabolic pathways
00240 Pyrimidine metabolism

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139