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Gene : WLIM2b A. thaliana

Gene ID  ? AT3G55770
Brief Description  GATA type zinc finger transcription factor family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? GATA type zinc finger transcription factor family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781); BEST Arabidopsis thaliana protein match is: GATA type zinc finger transcription factor family protein (TAIR:AT2G39900.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a member of the Arabidopsis LIM proteins: a family of actin bundlers with distinct expression patterns. WLIM1, WLIM2a, and WLIM2b are widely expressed, whereas PLIM2a, PLIM2b, and PLIM2c are predominantly expressed in pollen. Regulates actin cytoskeleton organization.  Source: TAIR, Jun 30, 2015.
Name  ? WLIM2b

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G55770 0.5kb upstream 0.5kb upstream 2671   true Chr3: 20702671-20705341
AT3G55770 0.5kb upstream 0.5kb upstream 500   false Chr3: 20702671-20703170
AT3G55770 0.5kb downstream 0.5kb downstream 2671   true Chr3: 20703171-20705841
AT3G55770 0.5kb downstream 0.5kb downstream 500   false Chr3: 20705342-20705841
AT3G55770 1.0kb upstream 1.0kb upstream 3171   true Chr3: 20702171-20705341
AT3G55770 1.0kb upstream 1.0kb upstream 1000   false Chr3: 20702171-20703170
AT3G55770 1.0kb downstream 1.0kb downstream 3171   true Chr3: 20703171-20706341
AT3G55770 1.0kb downstream 1.0kb downstream 1000   false Chr3: 20705342-20706341
AT3G55770 3.0kb upstream 3.0kb upstream 5171   true Chr3: 20700171-20705341
AT3G55770 3.0kb upstream 3.0kb upstream 3000   false Chr3: 20700171-20703170
AT3G55770 3.0kb downstream 3.0kb downstream 5171   true Chr3: 20703171-20708341
AT3G55770 3.0kb downstream 3.0kb downstream 3000   false Chr3: 20705342-20708341

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0 Pathways

Data Source: KEGG

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139