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Gene : KNAT3 A. thaliana

Gene ID  ? AT5G25220
Brief Description  homeobox protein knotted-1-like 3  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? KNOTTED1-like homeobox gene 3 (KNAT3); FUNCTIONS IN: transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to light stimulus, detection of cytokinin stimulus, cellular response to cytokine stimulus; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 35 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ELK (InterPro:IPR005539), Homeobox (InterPro:IPR001356), KNOX1 (InterPro:IPR005540), Homeodomain-like (InterPro:IPR009057), KNOX2 (InterPro:IPR005541), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: KNOTTED1-like homeobox gene 4 (TAIR:AT5G11060.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? A member of class II knotted1-like homeobox gene family (together with KNAT4 and KNAT5). Expressed in: hypocotyl-root boundary, anther-filament junction in flowers, ovule-funiculus and peduncle-silique boundaries, petioles and root. Light-regulated expression with differential response to red/far-red light. KNAT3 promoter activity showed cell-type specific pattern along longitudinal root axis, restricted mainly to the differentiation zone of the root, namely in the cortex and pericycle. Not detected in lateral root primordia  Source: TAIR, Jun 30, 2015.
Name  ? KNOTTED1-like homeobox gene 3

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
BLH1 and KNAT3 together modulate seed germination and early seedling development by directly regulating ABI3 expression. 23663178

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G25220 0.5kb upstream 0.5kb upstream 3158   true Chr5: 8735444-8738601
AT5G25220 0.5kb upstream 0.5kb upstream 500   false Chr5: 8735444-8735943
AT5G25220 0.5kb downstream 0.5kb downstream 3158   true Chr5: 8735944-8739101
AT5G25220 0.5kb downstream 0.5kb downstream 500   false Chr5: 8738602-8739101
AT5G25220 1.0kb upstream 1.0kb upstream 3658   true Chr5: 8734944-8738601
AT5G25220 1.0kb upstream 1.0kb upstream 1000   false Chr5: 8734944-8735943
AT5G25220 1.0kb downstream 1.0kb downstream 3658   true Chr5: 8735944-8739601
AT5G25220 1.0kb downstream 1.0kb downstream 1000   false Chr5: 8738602-8739601
AT5G25220 3.0kb upstream 3.0kb upstream 5658   true Chr5: 8732944-8738601
AT5G25220 3.0kb upstream 3.0kb upstream 3000   false Chr5: 8732944-8735943
AT5G25220 3.0kb downstream 3.0kb downstream 5658   true Chr5: 8735944-8741601
AT5G25220 3.0kb downstream 3.0kb downstream 3000   false Chr5: 8738602-8741601

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0 Pathways

Data Source: KEGG

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139