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Gene : AT5G25510 A. thaliana

Gene ID  ? AT5G25510
Brief Description  Protein phosphatase 2A regulatory B subunit family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Protein phosphatase 2A regulatory B subunit family protein; FUNCTIONS IN: protein phosphatase type 2A regulator activity; INVOLVED IN: signal transduction; LOCATED IN: chloroplast, protein phosphatase type 2A complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2A, regulatory B subunit, B56 (InterPro:IPR002554); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2A regulatory B subunit family protein (TAIR:AT4G15415.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G25510 0.5kb upstream 0.5kb upstream 2871   true Chr5: 8882468-8885338
AT5G25510 0.5kb upstream 0.5kb upstream 500   false Chr5: 8884839-8885338
AT5G25510 0.5kb downstream 0.5kb downstream 2871   true Chr5: 8881968-8884838
AT5G25510 0.5kb downstream 0.5kb downstream 500   false Chr5: 8881968-8882467
AT5G25510 1.0kb upstream 1.0kb upstream 3371   true Chr5: 8882468-8885838
AT5G25510 1.0kb upstream 1.0kb upstream 1000   false Chr5: 8884839-8885838
AT5G25510 1.0kb downstream 1.0kb downstream 3371   true Chr5: 8881468-8884838
AT5G25510 1.0kb downstream 1.0kb downstream 1000   false Chr5: 8881468-8882467
AT5G25510 3.0kb upstream 3.0kb upstream 5371   true Chr5: 8882468-8887838
AT5G25510 3.0kb upstream 3.0kb upstream 3000   false Chr5: 8884839-8887838
AT5G25510 3.0kb downstream 3.0kb downstream 5371   true Chr5: 8879468-8884838
AT5G25510 3.0kb downstream 3.0kb downstream 3000   false Chr5: 8879468-8882467

Proteins

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1 Pathways

Data Source: KEGG

Identifier Name
03015 mRNA surveillance pathway

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Expression

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from InterPro    
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139