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Gene : SERPIN1 A. thaliana

Gene ID  ? AT1G47710
Brief Description  Serine protease inhibitor (SERPIN) family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Serine protease inhibitor (SERPIN) family protein; FUNCTIONS IN: serine-type endopeptidase inhibitor activity, cysteine-type endopeptidase inhibitor activity; INVOLVED IN: biological_process unknown; LOCATED IN: apoplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protease inhibitor I4, serpin, plant (InterPro:IPR015554), Protease inhibitor I4, serpin (InterPro:IPR000215); BEST Arabidopsis thaliana protein match is: Serine protease inhibitor (SERPIN) family protein (TAIR:AT3G45220.1).  Source: TAIR, Jun 30, 2015.

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2 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
AtSerpin1, which was found to be a potent inhibitor of AtMC9 activity in vitro through cleavage of its reactive center loop and covalent binding to AtMC9. [AtSerpin1] 17028019
AtSerpin1 and RD21 can modulate necrotroph-induced cell death. 23398119

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G47710 0.5kb upstream 0.5kb upstream 3741   true Chr1: 17556591-17560331
AT1G47710 0.5kb upstream 0.5kb upstream 500   false Chr1: 17556591-17557090
AT1G47710 0.5kb downstream 0.5kb downstream 3741   true Chr1: 17557091-17560831
AT1G47710 0.5kb downstream 0.5kb downstream 500   false Chr1: 17560332-17560831
AT1G47710 1.0kb upstream 1.0kb upstream 4241   true Chr1: 17556091-17560331
AT1G47710 1.0kb upstream 1.0kb upstream 1000   false Chr1: 17556091-17557090
AT1G47710 1.0kb downstream 1.0kb downstream 4241   true Chr1: 17557091-17561331
AT1G47710 1.0kb downstream 1.0kb downstream 1000   false Chr1: 17560332-17561331
AT1G47710 3.0kb upstream 3.0kb upstream 6241   true Chr1: 17554091-17560331
AT1G47710 3.0kb upstream 3.0kb upstream 3000   false Chr1: 17554091-17557090
AT1G47710 3.0kb downstream 3.0kb downstream 6241   true Chr1: 17557091-17563331
AT1G47710 3.0kb downstream 3.0kb downstream 3000   false Chr1: 17560332-17563331

Proteins

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Function

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0 Pathways

Data Source: KEGG

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Expression

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Array Expression

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Interactions

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Homology

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Stocks

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from RefGenome GO annotations assigned by RefGenome 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139