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Gene : EBP A. thaliana

Gene ID  ? AT3G16770
Brief Description  ethylene-responsive element binding protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? ethylene-responsive element binding protein (EBP); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT2G47520.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a member of the ERF (ethylene response factor) subfamily B-2 of the plant specific ERF/AP2 transcription factor family (RAP2.3). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.It is localized to the nucleus and acts as a transcriptional activator through the GCC-box. It has been identified as a suppressor of Bax-induced cell death by functional screening in yeast and can also suppress Bax-induced cell death in tobacco plants. Overexpression of this gene in tobacco BY-2 cells confers resistance to H2O2 and heat stresses. Overexpression in Arabidopsis causes upregulation of PDF1.2 and GST6. It is part of the ethylene signaling pathway and is predicted to act downstream of EIN2 and CTR1, but not under EIN3.  Source: TAIR, Jun 30, 2015.
Name  ? ethylene-responsive element binding protein
  • synonyms:
  • RELATED TO AP2 3,
  • ETHYLENE RESPONSE FACTOR 72,
  • RAP2.3,
  • ERF72,
  • ATEBP,
  • ethylene-responsive element binding protein

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3 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
Interaction of acyl-CoA-binding protein 4 with the ethylene-responsive element binding protein is induced by ethylene. 18836139
AtEB domains bind to a target DNA motif with a universal CG step core recognition and different flanking bases preference 19878300
RAP2.2, RAP2.3 and RAP2.12 play a role in modulating oxidative and osmotic stress tolerance during submergence acclimation. 25847219

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G16770 0.5kb upstream 0.5kb upstream 2044   true Chr3: 5705041-5707084
AT3G16770 0.5kb upstream 0.5kb upstream 500   false Chr3: 5705041-5705540
AT3G16770 0.5kb downstream 0.5kb downstream 2044   true Chr3: 5705541-5707584
AT3G16770 0.5kb downstream 0.5kb downstream 500   false Chr3: 5707085-5707584
AT3G16770 1.0kb upstream 1.0kb upstream 2544   true Chr3: 5704541-5707084
AT3G16770 1.0kb upstream 1.0kb upstream 1000   false Chr3: 5704541-5705540
AT3G16770 1.0kb downstream 1.0kb downstream 2544   true Chr3: 5705541-5708084
AT3G16770 1.0kb downstream 1.0kb downstream 1000   false Chr3: 5707085-5708084
AT3G16770 3.0kb upstream 3.0kb upstream 4544   true Chr3: 5702541-5707084
AT3G16770 3.0kb upstream 3.0kb upstream 3000   false Chr3: 5702541-5705540
AT3G16770 3.0kb downstream 3.0kb downstream 4544   true Chr3: 5705541-5710084
AT3G16770 3.0kb downstream 3.0kb downstream 3000   false Chr3: 5707085-5710084

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0 Pathways

Data Source: KEGG

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139