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Gene : CPK16 A. thaliana

Gene ID  ? AT2G17890
Brief Description  calcium-dependent protein kinase 16  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? calcium-dependent protein kinase 16 (CPK16); FUNCTIONS IN: protein serine/threonine kinase activity, calmodulin-dependent protein kinase activity, protein kinase activity, calcium ion binding, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Serine/threonine-protein kinase domain (InterPro:IPR002290), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase 18 (TAIR:AT4G36070.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a member of Calcium Dependent Protein Kinase. Protein is N-myristoylated. Localizes to the plasma membrane. Localizes to the chloroplast when the myristoylation motif is mutated.  Source: TAIR, Jun 30, 2015.
Name  ? calcium-dependent protein kinase 16
  • synonyms:
  • AtCDPK16,
  • calcium-dependent protein kinase 16,
  • CDPK16

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT2G17890 0.5kb upstream 0.5kb upstream 3762   true Chr2: 7769521-7773282
AT2G17890 0.5kb upstream 0.5kb upstream 500   false Chr2: 7772783-7773282
AT2G17890 0.5kb downstream 0.5kb downstream 3762   true Chr2: 7769021-7772782
AT2G17890 0.5kb downstream 0.5kb downstream 500   false Chr2: 7769021-7769520
AT2G17890 1.0kb upstream 1.0kb upstream 4262   true Chr2: 7769521-7773782
AT2G17890 1.0kb upstream 1.0kb upstream 1000   false Chr2: 7772783-7773782
AT2G17890 1.0kb downstream 1.0kb downstream 4262   true Chr2: 7768521-7772782
AT2G17890 1.0kb downstream 1.0kb downstream 1000   false Chr2: 7768521-7769520
AT2G17890 3.0kb upstream 3.0kb upstream 6262   true Chr2: 7769521-7775782
AT2G17890 3.0kb upstream 3.0kb upstream 3000   false Chr2: 7772783-7775782
AT2G17890 3.0kb downstream 3.0kb downstream 6262   true Chr2: 7766521-7772782
AT2G17890 3.0kb downstream 3.0kb downstream 3000   false Chr2: 7766521-7769520

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1 Pathways

Data Source: KEGG

Identifier Name
04626 Plant-pathogen interaction

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from GOC GO annotations assigned by the GO Consortium 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139