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Gene : AT1G51380 A. thaliana

Gene ID  ? AT1G51380
Brief Description  DEA(D/H)-box RNA helicase family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? DEA(D/H)-box RNA helicase family protein; FUNCTIONS IN: helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: eukaryotic initiation factor 4A-III (TAIR:AT3G19760.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G51380 0.5kb upstream 0.5kb upstream 3043   true Chr1: 19047172-19050214
AT1G51380 0.5kb upstream 0.5kb upstream 500   false Chr1: 19047172-19047671
AT1G51380 0.5kb downstream 0.5kb downstream 3043   true Chr1: 19047672-19050714
AT1G51380 0.5kb downstream 0.5kb downstream 500   false Chr1: 19050215-19050714
AT1G51380 1.0kb upstream 1.0kb upstream 3543   true Chr1: 19046672-19050214
AT1G51380 1.0kb upstream 1.0kb upstream 1000   false Chr1: 19046672-19047671
AT1G51380 1.0kb downstream 1.0kb downstream 3543   true Chr1: 19047672-19051214
AT1G51380 1.0kb downstream 1.0kb downstream 1000   false Chr1: 19050215-19051214
AT1G51380 3.0kb upstream 3.0kb upstream 5543   true Chr1: 19044672-19050214
AT1G51380 3.0kb upstream 3.0kb upstream 3000   false Chr1: 19044672-19047671
AT1G51380 3.0kb downstream 3.0kb downstream 5543   true Chr1: 19047672-19053214
AT1G51380 3.0kb downstream 3.0kb downstream 3000   false Chr1: 19050215-19053214

Proteins

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3 Pathways

Data Source: KEGG

Identifier Name
03015 mRNA surveillance pathway
03040 Spliceosome
03013 RNA transport

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Expression

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Array Expression

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0