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Gene : AT5G13980 A. thaliana

Gene ID  ? AT5G13980
Brief Description  Glycosyl hydrolase family 38 protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Glycosyl hydrolase family 38 protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: mannose metabolic process, carbohydrate metabolic process; LOCATED IN: apoplast, cell wall, plasma membrane, vacuole, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase/deacetylase, beta/alpha-barrel (InterPro:IPR011330), Glycoside hydrolase, family 38, central domain (InterPro:IPR015341), Glycoside hydrolase, family 38, core (InterPro:IPR000602), Glycosyl hydrolases 38, C-terminal (InterPro:IPR011682); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 38 protein (TAIR:AT3G26720.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G13980 0.5kb upstream 0.5kb upstream 6761   true Chr5: 4507906-4514666
AT5G13980 0.5kb upstream 0.5kb upstream 500   false Chr5: 4507906-4508405
AT5G13980 0.5kb downstream 0.5kb downstream 6761   true Chr5: 4508406-4515166
AT5G13980 0.5kb downstream 0.5kb downstream 500   false Chr5: 4514667-4515166
AT5G13980 1.0kb upstream 1.0kb upstream 7261   true Chr5: 4507406-4514666
AT5G13980 1.0kb upstream 1.0kb upstream 1000   false Chr5: 4507406-4508405
AT5G13980 1.0kb downstream 1.0kb downstream 7261   true Chr5: 4508406-4515666
AT5G13980 1.0kb downstream 1.0kb downstream 1000   false Chr5: 4514667-4515666
AT5G13980 3.0kb upstream 3.0kb upstream 9261   true Chr5: 4505406-4514666
AT5G13980 3.0kb upstream 3.0kb upstream 3000   false Chr5: 4505406-4508405
AT5G13980 3.0kb downstream 3.0kb downstream 9261   true Chr5: 4508406-4517666
AT5G13980 3.0kb downstream 3.0kb downstream 3000   false Chr5: 4514667-4517666

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1 Pathways

Data Source: KEGG

Identifier Name
00511 Other glycan degradation

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Expression

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from InterPro    
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0