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Gene : ADS2 A. thaliana

Gene ID  ? AT2G31360
Brief Description  16:0delta9 desaturase 2  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? 16:0delta9 desaturase 2 (DS2); FUNCTIONS IN: oxidoreductase activity, oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water; INVOLVED IN: oxidation reduction, lipid metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid desaturase, type 1, core (InterPro:IPR015876), Fatty acid desaturase, type 1 (InterPro:IPR005804); BEST Arabidopsis thaliana protein match is: delta 9 desaturase 1 (TAIR:AT1G06080.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a protein homologous to delta 9 acyl-lipid desaturases of cyanobacteria and acyl-CoA desaturases of yeast and mammals. expression up-regulated by cold temperature. It is involved in the synthesis of the 24:1n-9 and 26:1n-9 components of seed lipids, sphingolipids and the membrane phospholipids phosphatidylserine (PS), and phosphatidylethanolamine (PE).  Source: TAIR, Jun 30, 2015.
Name  ? 16:0delta9 desaturase 2
  • synonyms:
  • AtADS2

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2 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
AtADS2 is involved in the synthesis of glycerolipid and sphingolipids in the seed. 23175755
Data indicate that ADS2 is essential to adjust the acyl composition of organelle membrane lipid composition in response to cold stress. 23585650

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT2G31360 0.5kb upstream 0.5kb upstream 2861   true Chr2: 13371658-13374518
AT2G31360 0.5kb upstream 0.5kb upstream 500   false Chr2: 13374019-13374518
AT2G31360 0.5kb downstream 0.5kb downstream 2861   true Chr2: 13371158-13374018
AT2G31360 0.5kb downstream 0.5kb downstream 500   false Chr2: 13371158-13371657
AT2G31360 1.0kb upstream 1.0kb upstream 3361   true Chr2: 13371658-13375018
AT2G31360 1.0kb upstream 1.0kb upstream 1000   false Chr2: 13374019-13375018
AT2G31360 1.0kb downstream 1.0kb downstream 3361   true Chr2: 13370658-13374018
AT2G31360 1.0kb downstream 1.0kb downstream 1000   false Chr2: 13370658-13371657
AT2G31360 3.0kb upstream 3.0kb upstream 5361   true Chr2: 13371658-13377018
AT2G31360 3.0kb upstream 3.0kb upstream 3000   false Chr2: 13374019-13377018
AT2G31360 3.0kb downstream 3.0kb downstream 5361   true Chr2: 13368658-13374018
AT2G31360 3.0kb downstream 3.0kb downstream 3000   false Chr2: 13368658-13371657

Proteins

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Function

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2 Pathways

Data Source: KEGG

Identifier Name
01040 Biosynthesis of unsaturated fatty acids
01212 Fatty acid metabolism

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Expression

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139