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Gene : AT2G27480 A. thaliana

Gene ID  ? AT2G27480
Brief Description  Calcium-binding EF-hand family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT5G04170.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT2G27480 0.5kb upstream 0.5kb upstream 1869   true Chr2: 11746183-11748051
AT2G27480 0.5kb upstream 0.5kb upstream 500   false Chr2: 11746183-11746682
AT2G27480 0.5kb downstream 0.5kb downstream 1869   true Chr2: 11746683-11748551
AT2G27480 0.5kb downstream 0.5kb downstream 500   false Chr2: 11748052-11748551
AT2G27480 1.0kb upstream 1.0kb upstream 2369   true Chr2: 11745683-11748051
AT2G27480 1.0kb upstream 1.0kb upstream 1000   false Chr2: 11745683-11746682
AT2G27480 1.0kb downstream 1.0kb downstream 2369   true Chr2: 11746683-11749051
AT2G27480 1.0kb downstream 1.0kb downstream 1000   false Chr2: 11748052-11749051
AT2G27480 3.0kb upstream 3.0kb upstream 4369   true Chr2: 11743683-11748051
AT2G27480 3.0kb upstream 3.0kb upstream 3000   false Chr2: 11743683-11746682
AT2G27480 3.0kb downstream 3.0kb downstream 4369   true Chr2: 11746683-11751051
AT2G27480 3.0kb downstream 3.0kb downstream 3000   false Chr2: 11748052-11751051

Proteins

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Function

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1 Pathways

Data Source: KEGG

Identifier Name
04626 Plant-pathogen interaction

Gene --> Ontology term

Gene --> Pathways


Expression

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Interactions

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from InterPro    
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139