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Gene : CPK34 A. thaliana

Gene ID  ? AT5G19360
Brief Description  calcium-dependent protein kinase 34  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? calcium-dependent protein kinase 34 (CPK34); FUNCTIONS IN: in 6 functions; INVOLVED IN: regulation of pollen tube growth, protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: plasma membrane, cytoplasm; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Serine/threonine-protein kinase domain (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand-like domain (InterPro:IPR011992), EF-hand (InterPro:IPR018248), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase 17 (TAIR:AT5G12180.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? member of Calcium Dependent Protein Kinase  Source: TAIR, Jun 30, 2015.
Name  ? calcium-dependent protein kinase 34
  • synonyms:
  • AtCPK34

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
CPK17 and -34 transduce Ca(2+) signals to increase the rate of pollen tube tip growth and facilitate a response to tropism cues. 19392698

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G19360 0.5kb upstream 0.5kb upstream 3050   true Chr5: 6521405-6524454
AT5G19360 0.5kb upstream 0.5kb upstream 500   false Chr5: 6523955-6524454
AT5G19360 0.5kb downstream 0.5kb downstream 3050   true Chr5: 6520905-6523954
AT5G19360 0.5kb downstream 0.5kb downstream 500   false Chr5: 6520905-6521404
AT5G19360 1.0kb upstream 1.0kb upstream 3550   true Chr5: 6521405-6524954
AT5G19360 1.0kb upstream 1.0kb upstream 1000   false Chr5: 6523955-6524954
AT5G19360 1.0kb downstream 1.0kb downstream 3550   true Chr5: 6520405-6523954
AT5G19360 1.0kb downstream 1.0kb downstream 1000   false Chr5: 6520405-6521404
AT5G19360 3.0kb upstream 3.0kb upstream 5550   true Chr5: 6521405-6526954
AT5G19360 3.0kb upstream 3.0kb upstream 3000   false Chr5: 6523955-6526954
AT5G19360 3.0kb downstream 3.0kb downstream 5550   true Chr5: 6518405-6523954
AT5G19360 3.0kb downstream 3.0kb downstream 3000   false Chr5: 6518405-6521404

Proteins

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1 Pathways

Data Source: KEGG

Identifier Name
04626 Plant-pathogen interaction

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from GOC GO annotations assigned by the GO Consortium 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016