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Gene : RCN1 A. thaliana

Gene ID  ? AT1G25490
Brief Description  ARM repeat superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? ROOTS CURL IN NPA (RCN1); FUNCTIONS IN: protein phosphatase type 2A regulator activity; INVOLVED IN: response to ethylene stimulus, abscisic acid mediated signaling pathway, regulation of stomatal movement, positive regulation of abscisic acid mediated signaling pathway, auxin polar transport; LOCATED IN: cell wall, plasma membrane, protein phosphatase type 2A complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), HEAT, type 2 (InterPro:IPR021133), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: protein phosphatase 2A subunit A2 (TAIR:AT3G25800.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? One of three genes encoding phosphoprotein phosphatase 2A regulatory subunit A; Recessive ethylene-response mutant EER1 displays increased ethylene sensitivity in the hypocotyl and stem  Source: TAIR, Jun 30, 2015.
  • synonyms:
  • EER1,
  • REGA,

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4 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
The RCN1 protein affects overall hypocotyl elongation via negative regulation of ethylene synthesis in etiolated seedlings. 16798939
This study showed that hypocotyl and root growth exhibit different requirements for RCN1-mediated regulation of PP2A activity. 18162590
RCN1 controls signaling between methyl jasmonate and abscisic acid. MeJA and ABA failed to induce stomatal closure in RCN1 mutants. 18650210
Protein phosphorylation plays a key role in ethylene signaling, which is mediated by the activities of ethylene receptors, CTR1, and RCN1. 24043427


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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G25490 0.5kb upstream 0.5kb upstream 4499   true Chr1: 8950662-8955160
AT1G25490 0.5kb upstream 0.5kb upstream 500   false Chr1: 8950662-8951161
AT1G25490 0.5kb downstream 0.5kb downstream 4499   true Chr1: 8951162-8955660
AT1G25490 0.5kb downstream 0.5kb downstream 500   false Chr1: 8955161-8955660
AT1G25490 1.0kb upstream 1.0kb upstream 4999   true Chr1: 8950162-8955160
AT1G25490 1.0kb upstream 1.0kb upstream 1000   false Chr1: 8950162-8951161
AT1G25490 1.0kb downstream 1.0kb downstream 4999   true Chr1: 8951162-8956160
AT1G25490 1.0kb downstream 1.0kb downstream 1000   false Chr1: 8955161-8956160
AT1G25490 3.0kb upstream 3.0kb upstream 6999   true Chr1: 8948162-8955160
AT1G25490 3.0kb upstream 3.0kb upstream 3000   false Chr1: 8948162-8951161
AT1G25490 3.0kb downstream 3.0kb downstream 6999   true Chr1: 8951162-8958160
AT1G25490 3.0kb downstream 3.0kb downstream 3000   false Chr1: 8955161-8958160


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1 Pathways

Data Source: KEGG

Identifier Name
03015 mRNA surveillance pathway

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12 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139