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Gene : CYP71B13 A. thaliana

Gene ID  ? AT5G25140
Brief Description  cytochrome P450, family 71, subfamily B, polypeptide 13  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? cytochrome P450, family 71, subfamily B, polypeptide 13" (CYP71B13); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: ytochrome p450, family 71, subfamily B, polypeptide 11 (TAIR:AT5G25120.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? putative cytochrome P450  Source: TAIR, Jun 30, 2015.
Name  ? cytochrome P450, family 71, subfamily B, polypeptide 13

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G25140 0.5kb upstream 0.5kb upstream 2934   true Chr5: 8671816-8674749
AT5G25140 0.5kb upstream 0.5kb upstream 500   false Chr5: 8671816-8672315
AT5G25140 0.5kb downstream 0.5kb downstream 2934   true Chr5: 8672316-8675249
AT5G25140 0.5kb downstream 0.5kb downstream 500   false Chr5: 8674750-8675249
AT5G25140 1.0kb upstream 1.0kb upstream 3434   true Chr5: 8671316-8674749
AT5G25140 1.0kb upstream 1.0kb upstream 1000   false Chr5: 8671316-8672315
AT5G25140 1.0kb downstream 1.0kb downstream 3434   true Chr5: 8672316-8675749
AT5G25140 1.0kb downstream 1.0kb downstream 1000   false Chr5: 8674750-8675749
AT5G25140 3.0kb upstream 3.0kb upstream 5434   true Chr5: 8669316-8674749
AT5G25140 3.0kb upstream 3.0kb upstream 3000   false Chr5: 8669316-8672315
AT5G25140 3.0kb downstream 3.0kb downstream 5434   true Chr5: 8672316-8677749
AT5G25140 3.0kb downstream 3.0kb downstream 3000   false Chr5: 8674750-8677749

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4 Pathways

Data Source: KEGG

Identifier Name
01100 Metabolic pathways
01110 Biosynthesis of secondary metabolites
00903 Limonene and pinene degradation
00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis

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Expression

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from InterPro    
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0