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Gene : OCT6 A. thaliana

Gene ID  ? AT1G16370
Brief Description  organic cation/carnitine transporter 6  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? organic cation/carnitine transporter 6 (OCT6); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: organic cation/carnitine transporter5 (TAIR:AT1G79410.1).  Source: TAIR, Jun 30, 2015.
Name  ? organic cation/carnitine transporter 6
  • synonyms:
  • ATOCT6

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI


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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G16370 0.5kb upstream 0.5kb upstream 2315   true Chr1: 5596133-5598447
AT1G16370 0.5kb upstream 0.5kb upstream 500   false Chr1: 5596133-5596632
AT1G16370 0.5kb downstream 0.5kb downstream 2315   true Chr1: 5596633-5598947
AT1G16370 0.5kb downstream 0.5kb downstream 500   false Chr1: 5598448-5598947
AT1G16370 1.0kb upstream 1.0kb upstream 2815   true Chr1: 5595633-5598447
AT1G16370 1.0kb upstream 1.0kb upstream 1000   false Chr1: 5595633-5596632
AT1G16370 1.0kb downstream 1.0kb downstream 2815   true Chr1: 5596633-5599447
AT1G16370 1.0kb downstream 1.0kb downstream 1000   false Chr1: 5598448-5599447
AT1G16370 3.0kb upstream 3.0kb upstream 4815   true Chr1: 5593633-5598447
AT1G16370 3.0kb upstream 3.0kb upstream 3000   false Chr1: 5593633-5596632
AT1G16370 3.0kb downstream 3.0kb downstream 4815   true Chr1: 5596633-5601447
AT1G16370 3.0kb downstream 3.0kb downstream 3000   false Chr1: 5598448-5601447


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8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0