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Gene : AT3G10190 A. thaliana

Gene ID  ? AT3G10190
Brief Description  Calcium-binding EF-hand family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT2G41410.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a protein with sequence similarity to calmodulins. Loss of function mutations have decreased response to chitin elicitors suggesting a role in plant response to fungal pathogens.  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI


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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G10190 0.5kb upstream 0.5kb upstream 1465   true Chr3: 3154723-3156187
AT3G10190 0.5kb upstream 0.5kb upstream 500   false Chr3: 3154723-3155222
AT3G10190 0.5kb downstream 0.5kb downstream 1465   true Chr3: 3155223-3156687
AT3G10190 0.5kb downstream 0.5kb downstream 500   false Chr3: 3156188-3156687
AT3G10190 1.0kb upstream 1.0kb upstream 1965   true Chr3: 3154223-3156187
AT3G10190 1.0kb upstream 1.0kb upstream 1000   false Chr3: 3154223-3155222
AT3G10190 1.0kb downstream 1.0kb downstream 1965   true Chr3: 3155223-3157187
AT3G10190 1.0kb downstream 1.0kb downstream 1000   false Chr3: 3156188-3157187
AT3G10190 3.0kb upstream 3.0kb upstream 3965   true Chr3: 3152223-3156187
AT3G10190 3.0kb upstream 3.0kb upstream 3000   false Chr3: 3152223-3155222
AT3G10190 3.0kb downstream 3.0kb downstream 3965   true Chr3: 3155223-3159187
AT3G10190 3.0kb downstream 3.0kb downstream 3000   false Chr3: 3156188-3159187


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1 Pathways

Data Source: KEGG

Identifier Name
04626 Plant-pathogen interaction

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from InterPro    
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139