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Gene : AT1G62820 A. thaliana

Gene ID  ? AT1G62820
Brief Description  Calcium-binding EF-hand family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: response to cold; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT1G12310.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G62820 0.5kb upstream 0.5kb upstream 1686   true Chr1: 23263214-23264899
AT1G62820 0.5kb upstream 0.5kb upstream 500   false Chr1: 23264400-23264899
AT1G62820 0.5kb downstream 0.5kb downstream 1686   true Chr1: 23262714-23264399
AT1G62820 0.5kb downstream 0.5kb downstream 500   false Chr1: 23262714-23263213
AT1G62820 1.0kb upstream 1.0kb upstream 2186   true Chr1: 23263214-23265399
AT1G62820 1.0kb upstream 1.0kb upstream 1000   false Chr1: 23264400-23265399
AT1G62820 1.0kb downstream 1.0kb downstream 2186   true Chr1: 23262214-23264399
AT1G62820 1.0kb downstream 1.0kb downstream 1000   false Chr1: 23262214-23263213
AT1G62820 3.0kb upstream 3.0kb upstream 4186   true Chr1: 23263214-23267399
AT1G62820 3.0kb upstream 3.0kb upstream 3000   false Chr1: 23264400-23267399
AT1G62820 3.0kb downstream 3.0kb downstream 4186   true Chr1: 23260214-23264399
AT1G62820 3.0kb downstream 3.0kb downstream 3000   false Chr1: 23260214-23263213

Proteins

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Function

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1 Pathways

Data Source: KEGG

Identifier Name
04626 Plant-pathogen interaction

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Gene --> Pathways


Expression

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Interactions

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from InterPro    
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0