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Gene : PAB8 A. thaliana

Gene ID  ? AT1G49760
Brief Description  poly(A) binding protein 8  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? poly(A) binding protein 8 (PAB8); FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Polyadenylate-binding protein/Hyperplastic disc protein (InterPro:IPR002004), RNA recognition motif, RNP-1 (InterPro:IPR000504), Polyadenylate binding protein, human types 1, 2, 3, 4 (InterPro:IPR006515), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: poly(A) binding protein 2 (TAIR:AT4G34110.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? polyadenylate-binding protein, putative / PABP, putative, similar to poly(A)-binding protein GB:AAF66825 GI:7673359 from (Nicotiana tabacum). Highly and ubiquitously expressed. Member of the class II PABP family.  Source: TAIR, Jun 30, 2015.
Name  ? poly(A) binding protein 8
  • synonyms:
  • PABP8,
  • POLY(A) BINDING PROTEIN 8

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G49760 0.5kb upstream 0.5kb upstream 4138   true Chr1: 18415974-18420111
AT1G49760 0.5kb upstream 0.5kb upstream 500   false Chr1: 18415974-18416473
AT1G49760 0.5kb downstream 0.5kb downstream 4138   true Chr1: 18416474-18420611
AT1G49760 0.5kb downstream 0.5kb downstream 500   false Chr1: 18420112-18420611
AT1G49760 1.0kb upstream 1.0kb upstream 4638   true Chr1: 18415474-18420111
AT1G49760 1.0kb upstream 1.0kb upstream 1000   false Chr1: 18415474-18416473
AT1G49760 1.0kb downstream 1.0kb downstream 4638   true Chr1: 18416474-18421111
AT1G49760 1.0kb downstream 1.0kb downstream 1000   false Chr1: 18420112-18421111
AT1G49760 3.0kb upstream 3.0kb upstream 6638   true Chr1: 18413474-18420111
AT1G49760 3.0kb upstream 3.0kb upstream 3000   false Chr1: 18413474-18416473
AT1G49760 3.0kb downstream 3.0kb downstream 6638   true Chr1: 18416474-18423111
AT1G49760 3.0kb downstream 3.0kb downstream 3000   false Chr1: 18420112-18423111

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3 Pathways

Data Source: KEGG

Identifier Name
03018 RNA degradation
03015 mRNA surveillance pathway
03013 RNA transport

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Expression

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from InterPro    
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139