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Gene : AT5G43620 A. thaliana

Gene ID  ? AT5G43620
Brief Description  Pre-mRNA cleavage complex II  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Pre-mRNA cleavage complex II; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: Pre-mRNA cleavage complex II (TAIR:AT1G66500.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G43620 0.5kb upstream 0.5kb upstream 2018   true Chr5: 17521986-17524003
AT5G43620 0.5kb upstream 0.5kb upstream 500   false Chr5: 17521986-17522485
AT5G43620 0.5kb downstream 0.5kb downstream 2018   true Chr5: 17522486-17524503
AT5G43620 0.5kb downstream 0.5kb downstream 500   false Chr5: 17524004-17524503
AT5G43620 1.0kb upstream 1.0kb upstream 2518   true Chr5: 17521486-17524003
AT5G43620 1.0kb upstream 1.0kb upstream 1000   false Chr5: 17521486-17522485
AT5G43620 1.0kb downstream 1.0kb downstream 2518   true Chr5: 17522486-17525003
AT5G43620 1.0kb downstream 1.0kb downstream 1000   false Chr5: 17524004-17525003
AT5G43620 3.0kb upstream 3.0kb upstream 4518   true Chr5: 17519486-17524003
AT5G43620 3.0kb upstream 3.0kb upstream 3000   false Chr5: 17519486-17522485
AT5G43620 3.0kb downstream 3.0kb downstream 4518   true Chr5: 17522486-17527003
AT5G43620 3.0kb downstream 3.0kb downstream 3000   false Chr5: 17524004-17527003

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1 Pathways

Data Source: KEGG

Identifier Name
03015 mRNA surveillance pathway

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Expression

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139