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Gene : TIM17-1 A. thaliana

Gene ID  ? AT1G20350
Brief Description  translocase inner membrane subunit 17-1  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? translocase inner membrane subunit 17-1 (TIM17-1); FUNCTIONS IN: protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein transport; LOCATED IN: mitochondrial inner membrane presequence translocase complex; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane translocase complex, subunit Tim17/22 (InterPro:IPR003397); BEST Arabidopsis thaliana protein match is: translocase inner membrane subunit 17-2 (TAIR:AT2G37410.2).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? mitochondrial inner membrane translocase  Source: TAIR, Jun 30, 2015.
Name  ? translocase inner membrane subunit 17-1
  • synonyms:
  • translocase inner membrane subunit 17-1,
  • ATTIM17-1

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
Tim17-1 plays a role in defining the timing of germination in Arabidopsis. 25253887

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G20350 0.5kb upstream 0.5kb upstream 1465   true Chr1: 7043128-7044592
AT1G20350 0.5kb upstream 0.5kb upstream 500   false Chr1: 7043128-7043627
AT1G20350 0.5kb downstream 0.5kb downstream 1465   true Chr1: 7043628-7045092
AT1G20350 0.5kb downstream 0.5kb downstream 500   false Chr1: 7044593-7045092
AT1G20350 1.0kb upstream 1.0kb upstream 1965   true Chr1: 7042628-7044592
AT1G20350 1.0kb upstream 1.0kb upstream 1000   false Chr1: 7042628-7043627
AT1G20350 1.0kb downstream 1.0kb downstream 1965   true Chr1: 7043628-7045592
AT1G20350 1.0kb downstream 1.0kb downstream 1000   false Chr1: 7044593-7045592
AT1G20350 3.0kb upstream 3.0kb upstream 3965   true Chr1: 7040628-7044592
AT1G20350 3.0kb upstream 3.0kb upstream 3000   false Chr1: 7040628-7043627
AT1G20350 3.0kb downstream 3.0kb downstream 3965   true Chr1: 7043628-7047592
AT1G20350 3.0kb downstream 3.0kb downstream 3000   false Chr1: 7044593-7047592

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0 Pathways

Data Source: KEGG

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Expression

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from InterPro    
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016