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Gene : CAM9 A. thaliana

Gene ID  ? AT3G51920
Brief Description  calmodulin 9  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? calmodulin 9 (CAM9); FUNCTIONS IN: calcium ion binding; INVOLVED IN: response to salt stress, response to water deprivation, detection of calcium ion, calcium-mediated signaling, response to abscisic acid stimulus; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin 1 (TAIR:AT5G37780.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? encodes a divergent member of calmodulin, which is an EF-hand family of Ca2 -binding proteins. This gene is expressed in leaves, flowers and siliques. The gene functionally complements yeast calmodulin 1 (CAM1) but only when selected against the plasmid harboring wild-type yeast sequences. Also the protein does not form formed a complex with a basic amphiphilic helical peptide in the presence of Ca2 in vitro. Authors suggest that this gene may represent a Ca2 -binding sensor protein that interacts with a more limited set of target proteins than do more conventional CaM isoforms. Mutations in this gene alter plant responses to abiotic stress and abscisic acid.  Source: TAIR, Jun 30, 2015.
Name  ? calmodulin 9
  • synonyms:
  • CALMODULIN LIKE PROTEIN 9,
  • ATCML9,
  • CML9

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4 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
CML9 alters plant responses to abiotic stress, such as salt stress, and abscisic acid. 18643966
These findings suggest that binding of PRR2 to CML9 may be an important mechanism to modulate the physiological role of this transcription factor in plants. 20627089
CML9 participates in plant innate immunity. 22563930
CML9, a calmodulin-like protein that appears to be involved in plant responses to both biotic and abiotic stress. [CML9] 22899061

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G51920 0.5kb upstream 0.5kb upstream 2208   true Chr3: 19267951-19270158
AT3G51920 0.5kb upstream 0.5kb upstream 500   false Chr3: 19269659-19270158
AT3G51920 0.5kb downstream 0.5kb downstream 2208   true Chr3: 19267451-19269658
AT3G51920 0.5kb downstream 0.5kb downstream 500   false Chr3: 19267451-19267950
AT3G51920 1.0kb upstream 1.0kb upstream 2708   true Chr3: 19267951-19270658
AT3G51920 1.0kb upstream 1.0kb upstream 1000   false Chr3: 19269659-19270658
AT3G51920 1.0kb downstream 1.0kb downstream 2708   true Chr3: 19266951-19269658
AT3G51920 1.0kb downstream 1.0kb downstream 1000   false Chr3: 19266951-19267950
AT3G51920 3.0kb upstream 3.0kb upstream 4708   true Chr3: 19267951-19272658
AT3G51920 3.0kb upstream 3.0kb upstream 3000   false Chr3: 19269659-19272658
AT3G51920 3.0kb downstream 3.0kb downstream 4708   true Chr3: 19264951-19269658
AT3G51920 3.0kb downstream 3.0kb downstream 3000   false Chr3: 19264951-19267950

Proteins

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1 Pathways

Data Source: KEGG

Identifier Name
04626 Plant-pathogen interaction

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12 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from InterPro    
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139