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Gene : CPK23 A. thaliana

Gene ID  ? AT4G04740
Brief Description  calcium-dependent protein kinase 23  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? calcium-dependent protein kinase 23 (CPK23); FUNCTIONS IN: in 6 functions; INVOLVED IN: response to cadmium ion, protein amino acid phosphorylation, N-terminal protein myristoylation; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), Serine/threonine-protein kinase domain (InterPro:IPR002290), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase 21 (TAIR:AT4G04720.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? member of Calcium Dependent Protein Kinase  Source: TAIR, Jun 30, 2015.
Name  ? calcium-dependent protein kinase 23
  • synonyms:
  • ATCPK23

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT4G04740 0.5kb upstream 0.5kb upstream 6341   true Chr4: 2402897-2409237
AT4G04740 0.5kb upstream 0.5kb upstream 500   false Chr4: 2408738-2409237
AT4G04740 0.5kb downstream 0.5kb downstream 6341   true Chr4: 2402397-2408737
AT4G04740 0.5kb downstream 0.5kb downstream 500   false Chr4: 2402397-2402896
AT4G04740 1.0kb upstream 1.0kb upstream 6841   true Chr4: 2402897-2409737
AT4G04740 1.0kb upstream 1.0kb upstream 1000   false Chr4: 2408738-2409737
AT4G04740 1.0kb downstream 1.0kb downstream 6841   true Chr4: 2401897-2408737
AT4G04740 1.0kb downstream 1.0kb downstream 1000   false Chr4: 2401897-2402896
AT4G04740 3.0kb upstream 3.0kb upstream 8841   true Chr4: 2402897-2411737
AT4G04740 3.0kb upstream 3.0kb upstream 3000   false Chr4: 2408738-2411737
AT4G04740 3.0kb downstream 3.0kb downstream 8841   true Chr4: 2399897-2408737
AT4G04740 3.0kb downstream 3.0kb downstream 3000   false Chr4: 2399897-2402896

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1 Pathways

Data Source: KEGG

Identifier Name
04626 Plant-pathogen interaction

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from InterPro    
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139