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Gene : CPK22 A. thaliana

Gene ID  ? AT4G04710
Brief Description  calcium-dependent kinase-like protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? calcium-dependent protein kinase 22 (CPK22); FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), Serine/threonine-protein kinase domain (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand-like domain (InterPro:IPR011992), EF-hand (InterPro:IPR018248), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase 21 (TAIR:AT4G04720.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? member of Calcium Dependent Protein Kinase  Source: TAIR, Jun 30, 2015.
Name  ? calcium-dependent protein kinase 22

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT4G04710 0.5kb upstream 0.5kb upstream 3183   true Chr4: 2390307-2393489
AT4G04710 0.5kb upstream 0.5kb upstream 500   false Chr4: 2392990-2393489
AT4G04710 0.5kb downstream 0.5kb downstream 3183   true Chr4: 2389807-2392989
AT4G04710 0.5kb downstream 0.5kb downstream 500   false Chr4: 2389807-2390306
AT4G04710 1.0kb upstream 1.0kb upstream 3683   true Chr4: 2390307-2393989
AT4G04710 1.0kb upstream 1.0kb upstream 1000   false Chr4: 2392990-2393989
AT4G04710 1.0kb downstream 1.0kb downstream 3683   true Chr4: 2389307-2392989
AT4G04710 1.0kb downstream 1.0kb downstream 1000   false Chr4: 2389307-2390306
AT4G04710 3.0kb upstream 3.0kb upstream 5683   true Chr4: 2390307-2395989
AT4G04710 3.0kb upstream 3.0kb upstream 3000   false Chr4: 2392990-2395989
AT4G04710 3.0kb downstream 3.0kb downstream 5683   true Chr4: 2387307-2392989
AT4G04710 3.0kb downstream 3.0kb downstream 3000   false Chr4: 2387307-2390306

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1 Pathways

Data Source: KEGG

Identifier Name
04626 Plant-pathogen interaction

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8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from GOC GO annotations assigned by the GO Consortium 8/01/2016
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0