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Gene : CPK21 A. thaliana

Gene ID  ? AT4G04720
Brief Description  calcium-dependent protein kinase 21  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? calcium-dependent protein kinase 21 (CPK21); FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Serine/threonine-protein kinase domain (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand-like domain (InterPro:IPR011992), EF-hand (InterPro:IPR018248), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase 15 (TAIR:AT4G21940.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? member of Calcium Dependent Protein Kinase  Source: TAIR, Jun 30, 2015.
Name  ? calcium-dependent protein kinase 21
  • synonyms:
  • AtCPK21

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2 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
Loss-of-function seedlings of cpk21 are more tolerant to hyperosmotic stress. 20978086
Redox regulation of AtCPK21 by Trx-h1 in Arabidopsis thaliana in response to external stimuli is important for appropriate cellular responses. 23615222


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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT4G04720 0.5kb upstream 0.5kb upstream 4652   true Chr4: 2393653-2398304
AT4G04720 0.5kb upstream 0.5kb upstream 500   false Chr4: 2397805-2398304
AT4G04720 0.5kb downstream 0.5kb downstream 4652   true Chr4: 2393153-2397804
AT4G04720 0.5kb downstream 0.5kb downstream 500   false Chr4: 2393153-2393652
AT4G04720 1.0kb upstream 1.0kb upstream 5152   true Chr4: 2393653-2398804
AT4G04720 1.0kb upstream 1.0kb upstream 1000   false Chr4: 2397805-2398804
AT4G04720 1.0kb downstream 1.0kb downstream 5152   true Chr4: 2392653-2397804
AT4G04720 1.0kb downstream 1.0kb downstream 1000   false Chr4: 2392653-2393652
AT4G04720 3.0kb upstream 3.0kb upstream 7152   true Chr4: 2393653-2400804
AT4G04720 3.0kb upstream 3.0kb upstream 3000   false Chr4: 2397805-2400804
AT4G04720 3.0kb downstream 3.0kb downstream 7152   true Chr4: 2390653-2397804
AT4G04720 3.0kb downstream 3.0kb downstream 3000   false Chr4: 2390653-2393652


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1 Pathways

Data Source: KEGG

Identifier Name
04626 Plant-pathogen interaction

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12 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from GOC GO annotations assigned by the GO Consortium 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139