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Gene : CPK26 A. thaliana

Gene ID  ? AT4G38230
Brief Description  calcium-dependent protein kinase 26  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? calcium-dependent protein kinase 26 (CPK26); FUNCTIONS IN: calmodulin-dependent protein kinase activity, protein kinase activity, kinase activity, calcium ion binding, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: Calcium-dependent protein kinase family protein (TAIR:AT2G17290.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? member of Calcium Dependent Protein Kinase  Source: TAIR, Jun 30, 2015.
Name  ? calcium-dependent protein kinase 26
  • synonyms:
  • ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 26,
  • ATCPK26

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT4G38230 0.5kb upstream 0.5kb upstream 3335   true Chr4: 17928677-17932011
AT4G38230 0.5kb upstream 0.5kb upstream 500   false Chr4: 17931512-17932011
AT4G38230 0.5kb downstream 0.5kb downstream 3335   true Chr4: 17928177-17931511
AT4G38230 0.5kb downstream 0.5kb downstream 500   false Chr4: 17928177-17928676
AT4G38230 1.0kb upstream 1.0kb upstream 3835   true Chr4: 17928677-17932511
AT4G38230 1.0kb upstream 1.0kb upstream 1000   false Chr4: 17931512-17932511
AT4G38230 1.0kb downstream 1.0kb downstream 3835   true Chr4: 17927677-17931511
AT4G38230 1.0kb downstream 1.0kb downstream 1000   false Chr4: 17927677-17928676
AT4G38230 3.0kb upstream 3.0kb upstream 5835   true Chr4: 17928677-17934511
AT4G38230 3.0kb upstream 3.0kb upstream 3000   false Chr4: 17931512-17934511
AT4G38230 3.0kb downstream 3.0kb downstream 5835   true Chr4: 17925677-17931511
AT4G38230 3.0kb downstream 3.0kb downstream 3000   false Chr4: 17925677-17928676

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1 Pathways

Data Source: KEGG

Identifier Name
04626 Plant-pathogen interaction

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139