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Gene : CDPK2 A. thaliana

Gene ID  ? AT1G35670
Brief Description  calcium-dependent protein kinase 2  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? calcium-dependent protein kinase 2 (CDPK2); FUNCTIONS IN: calmodulin-dependent protein kinase activity, kinase activity; INVOLVED IN: response to water deprivation, response to salt stress, protein amino acid phosphorylation, positive regulation of abscisic acid mediated signaling pathway; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Serine/threonine-protein kinase domain (InterPro:IPR002290), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase 4 (TAIR:AT4G09570.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a Ca(2 )-dependent, calmodulin-independent protein kinase that is rapidly induced by drought and high-salt stress but not by low-temperature stress or heat stress. Positive regulator of ABA signaling. Phosphorylates ABA responsive transcription factors ABF1 and ABF4.  Source: TAIR, Jun 30, 2015.
Name  ? calcium-dependent protein kinase 2
  • synonyms:
  • CPK11,
  • ATCPK11,
  • ATCDPK2,
  • calcium-dependent protein kinase 2

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3 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
TaSC overexpression in Arabidopsis ecotype Columbia and AtSC knockout mutant (atsc)signi fi cantly up-regulated the expression of AtFRY1, AtSAD1, and AtCDPK2. AtCDPK2 overexpression in atsc rescued the salt-sensitive phenotype of atsc. 22821939
CPK11 and CPK24 together mediate the Ca(2+)-dependent inhibition of the inward rectifying K+ channels and participate in the regulation of pollen tube growth in Arabidopsis. 23449501
Two abscisic acid (ABA)-activated calcium-dependent protein kinases, CPK4 and CPK11, phosphorylate the C-terminus of ACS6 and increase the stability of ACS6 in ethylene biosynthesis. 24738778

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G35670 0.5kb upstream 0.5kb upstream 3445   true Chr1: 13204845-13208289
AT1G35670 0.5kb upstream 0.5kb upstream 500   false Chr1: 13204845-13205344
AT1G35670 0.5kb downstream 0.5kb downstream 3445   true Chr1: 13205345-13208789
AT1G35670 0.5kb downstream 0.5kb downstream 500   false Chr1: 13208290-13208789
AT1G35670 1.0kb upstream 1.0kb upstream 3945   true Chr1: 13204345-13208289
AT1G35670 1.0kb upstream 1.0kb upstream 1000   false Chr1: 13204345-13205344
AT1G35670 1.0kb downstream 1.0kb downstream 3945   true Chr1: 13205345-13209289
AT1G35670 1.0kb downstream 1.0kb downstream 1000   false Chr1: 13208290-13209289
AT1G35670 3.0kb upstream 3.0kb upstream 5945   true Chr1: 13202345-13208289
AT1G35670 3.0kb upstream 3.0kb upstream 3000   false Chr1: 13202345-13205344
AT1G35670 3.0kb downstream 3.0kb downstream 5945   true Chr1: 13205345-13211289
AT1G35670 3.0kb downstream 3.0kb downstream 3000   false Chr1: 13208290-13211289

Proteins

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1 Pathways

Data Source: KEGG

Identifier Name
04626 Plant-pathogen interaction

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12 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139