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Gene : AT5G55550 A. thaliana

Gene ID  ? AT5G55550
Brief Description  RNA-binding (RRM/RBD/RNP motifs) family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G26650.2).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G55550 0.5kb upstream 0.5kb upstream 3110   true Chr5: 22501535-22504644
AT5G55550 0.5kb upstream 0.5kb upstream 500   false Chr5: 22504145-22504644
AT5G55550 0.5kb downstream 0.5kb downstream 3110   true Chr5: 22501035-22504144
AT5G55550 0.5kb downstream 0.5kb downstream 500   false Chr5: 22501035-22501534
AT5G55550 1.0kb upstream 1.0kb upstream 3610   true Chr5: 22501535-22505144
AT5G55550 1.0kb upstream 1.0kb upstream 1000   false Chr5: 22504145-22505144
AT5G55550 1.0kb downstream 1.0kb downstream 3610   true Chr5: 22500535-22504144
AT5G55550 1.0kb downstream 1.0kb downstream 1000   false Chr5: 22500535-22501534
AT5G55550 3.0kb upstream 3.0kb upstream 5610   true Chr5: 22501535-22507144
AT5G55550 3.0kb upstream 3.0kb upstream 3000   false Chr5: 22504145-22507144
AT5G55550 3.0kb downstream 3.0kb downstream 5610   true Chr5: 22498535-22504144
AT5G55550 3.0kb downstream 3.0kb downstream 3000   false Chr5: 22498535-22501534

Proteins

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Function

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1 Pathways

Data Source: KEGG

Identifier Name
03015 mRNA surveillance pathway

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Expression

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from InterPro    
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0