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Gene : CML23 A. thaliana

Gene ID  ? AT1G66400
Brief Description  calmodulin like 23  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? calmodulin like 23 (CML23); FUNCTIONS IN: calcium ion binding; INVOLVED IN: regulation of flower development, regulation of nitric oxide metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: EF hand calcium-binding protein family (TAIR:AT5G37770.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a calmodulin-like protein. Regulates nitric oxide levels and transition to flowering.  Source: TAIR, Jun 30, 2015.
Name  ? calmodulin like 23

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G66400 0.5kb upstream 0.5kb upstream 1475   true Chr1: 24770419-24771893
AT1G66400 0.5kb upstream 0.5kb upstream 500   false Chr1: 24771394-24771893
AT1G66400 0.5kb downstream 0.5kb downstream 1475   true Chr1: 24769919-24771393
AT1G66400 0.5kb downstream 0.5kb downstream 500   false Chr1: 24769919-24770418
AT1G66400 1.0kb upstream 1.0kb upstream 1975   true Chr1: 24770419-24772393
AT1G66400 1.0kb upstream 1.0kb upstream 1000   false Chr1: 24771394-24772393
AT1G66400 1.0kb downstream 1.0kb downstream 1975   true Chr1: 24769419-24771393
AT1G66400 1.0kb downstream 1.0kb downstream 1000   false Chr1: 24769419-24770418
AT1G66400 3.0kb upstream 3.0kb upstream 3975   true Chr1: 24770419-24774393
AT1G66400 3.0kb upstream 3.0kb upstream 3000   false Chr1: 24771394-24774393
AT1G66400 3.0kb downstream 3.0kb downstream 3975   true Chr1: 24767419-24771393
AT1G66400 3.0kb downstream 3.0kb downstream 3000   false Chr1: 24767419-24770418

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1 Pathways

Data Source: KEGG

Identifier Name
04626 Plant-pathogen interaction

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from GOC GO annotations assigned by the GO Consortium 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0