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Gene : CAM4 A. thaliana

Gene ID  ? AT1G66410
Brief Description  calmodulin 4  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? calmodulin 4 (CAM4); FUNCTIONS IN: calcium ion binding, signal transducer activity; INVOLVED IN: calcium-mediated signaling; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand-like domain (InterPro:IPR011992), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin 1 (TAIR:AT5G37780.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? encodes a calmodulin  Source: TAIR, Jun 30, 2015.
Name  ? calmodulin 4
  • synonyms:
  • ACAM-4,
  • CALMODULIN 4

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G66410 0.5kb upstream 0.5kb upstream 2372   true Chr1: 24774113-24776484
AT1G66410 0.5kb upstream 0.5kb upstream 500   false Chr1: 24775985-24776484
AT1G66410 0.5kb downstream 0.5kb downstream 2372   true Chr1: 24773613-24775984
AT1G66410 0.5kb downstream 0.5kb downstream 500   false Chr1: 24773613-24774112
AT1G66410 1.0kb upstream 1.0kb upstream 2872   true Chr1: 24774113-24776984
AT1G66410 1.0kb upstream 1.0kb upstream 1000   false Chr1: 24775985-24776984
AT1G66410 1.0kb downstream 1.0kb downstream 2872   true Chr1: 24773113-24775984
AT1G66410 1.0kb downstream 1.0kb downstream 1000   false Chr1: 24773113-24774112
AT1G66410 3.0kb upstream 3.0kb upstream 4872   true Chr1: 24774113-24778984
AT1G66410 3.0kb upstream 3.0kb upstream 3000   false Chr1: 24775985-24778984
AT1G66410 3.0kb downstream 3.0kb downstream 4872   true Chr1: 24771113-24775984
AT1G66410 3.0kb downstream 3.0kb downstream 3000   false Chr1: 24771113-24774112

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2 Pathways

Data Source: KEGG

Identifier Name
04626 Plant-pathogen interaction
04070 Phosphatidylinositol signaling system

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from InterPro    
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139