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Gene : AT5G44090 A. thaliana

Gene ID  ? AT5G44090
Brief Description  Calcium-binding EF-hand family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992); BEST Arabidopsis thaliana protein match is: Calcium-binding EF hand family protein (TAIR:AT1G03960.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G44090 0.5kb upstream 0.5kb upstream 6262   true Chr5: 17742765-17749026
AT5G44090 0.5kb upstream 0.5kb upstream 500   false Chr5: 17748527-17749026
AT5G44090 0.5kb downstream 0.5kb downstream 6262   true Chr5: 17742265-17748526
AT5G44090 0.5kb downstream 0.5kb downstream 500   false Chr5: 17742265-17742764
AT5G44090 1.0kb upstream 1.0kb upstream 6762   true Chr5: 17742765-17749526
AT5G44090 1.0kb upstream 1.0kb upstream 1000   false Chr5: 17748527-17749526
AT5G44090 1.0kb downstream 1.0kb downstream 6762   true Chr5: 17741765-17748526
AT5G44090 1.0kb downstream 1.0kb downstream 1000   false Chr5: 17741765-17742764
AT5G44090 3.0kb upstream 3.0kb upstream 8762   true Chr5: 17742765-17751526
AT5G44090 3.0kb upstream 3.0kb upstream 3000   false Chr5: 17748527-17751526
AT5G44090 3.0kb downstream 3.0kb downstream 8762   true Chr5: 17739765-17748526
AT5G44090 3.0kb downstream 3.0kb downstream 3000   false Chr5: 17739765-17742764

Proteins

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Function

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1 Pathways

Data Source: KEGG

Identifier Name
03015 mRNA surveillance pathway

Gene --> Ontology term

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Expression

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from InterPro    
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139