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Gene : TOPP7 A. thaliana

Gene ID  ? AT4G11240
Brief Description  Calcineurin-like metallo-phosphoesterase superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? TOPP7; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: type one serine/threonine protein phosphatase 3 (TAIR:AT1G64040.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? encodes a type I serine/threonine protein phosphatase expressed in expressed in roots, rosettes and flowers.  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI


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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT4G11240 0.5kb upstream 0.5kb upstream 2706   true Chr4: 6846612-6849317
AT4G11240 0.5kb upstream 0.5kb upstream 500   false Chr4: 6846612-6847111
AT4G11240 0.5kb downstream 0.5kb downstream 2706   true Chr4: 6847112-6849817
AT4G11240 0.5kb downstream 0.5kb downstream 500   false Chr4: 6849318-6849817
AT4G11240 1.0kb upstream 1.0kb upstream 3206   true Chr4: 6846112-6849317
AT4G11240 1.0kb upstream 1.0kb upstream 1000   false Chr4: 6846112-6847111
AT4G11240 1.0kb downstream 1.0kb downstream 3206   true Chr4: 6847112-6850317
AT4G11240 1.0kb downstream 1.0kb downstream 1000   false Chr4: 6849318-6850317
AT4G11240 3.0kb upstream 3.0kb upstream 5206   true Chr4: 6844112-6849317
AT4G11240 3.0kb upstream 3.0kb upstream 3000   false Chr4: 6844112-6847111
AT4G11240 3.0kb downstream 3.0kb downstream 5206   true Chr4: 6847112-6852317
AT4G11240 3.0kb downstream 3.0kb downstream 3000   false Chr4: 6849318-6852317


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2 Pathways

Data Source: KEGG

Identifier Name
03015 mRNA surveillance pathway
04931 Insulin resistance

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139