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Gene : CDPK9 A. thaliana

Gene ID  ? AT5G23580
Brief Description  calmodulin-like domain protein kinase 9  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? calmodulin-like domain protein kinase 9 (CDPK9); FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Serine/threonine-protein kinase domain (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand-like domain (InterPro:IPR011992), EF-hand (InterPro:IPR018248), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase 2 (TAIR:AT1G35670.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? unique family of enzymes containing a single polypeptide chain with a kinase domain at the amino terminus and a putative calcium-binding EF hands structure at the carboxyl terminus; recombinant protein is fully active and induced by Ca2   Source: TAIR, Jun 30, 2015.
Name  ? calmodulin-like domain protein kinase 9
  • synonyms:
  • ATCPK12,
  • ARABIDOPSIS THALIANA CALMODULIN-LIKE DOMAIN PROTEIN KINASE 9,
  • ATCDPK9,
  • CALCIUM-DEPENDENT PROTEIN KINASE 12,
  • CPK12

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2 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
The Arabidopsis CPK12 is a negative ABA-signaling regulator in seed germination and post-germination growth. 21692804
Both up- and downregulation of CPK12 expression result in ABA hypersensitivity. 22041934

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G23580 0.5kb upstream 0.5kb upstream 2918   true Chr5: 7950202-7953119
AT5G23580 0.5kb upstream 0.5kb upstream 500   false Chr5: 7952620-7953119
AT5G23580 0.5kb downstream 0.5kb downstream 2918   true Chr5: 7949702-7952619
AT5G23580 0.5kb downstream 0.5kb downstream 500   false Chr5: 7949702-7950201
AT5G23580 1.0kb upstream 1.0kb upstream 3418   true Chr5: 7950202-7953619
AT5G23580 1.0kb upstream 1.0kb upstream 1000   false Chr5: 7952620-7953619
AT5G23580 1.0kb downstream 1.0kb downstream 3418   true Chr5: 7949202-7952619
AT5G23580 1.0kb downstream 1.0kb downstream 1000   false Chr5: 7949202-7950201
AT5G23580 3.0kb upstream 3.0kb upstream 5418   true Chr5: 7950202-7955619
AT5G23580 3.0kb upstream 3.0kb upstream 3000   false Chr5: 7952620-7955619
AT5G23580 3.0kb downstream 3.0kb downstream 5418   true Chr5: 7947202-7952619
AT5G23580 3.0kb downstream 3.0kb downstream 3000   false Chr5: 7947202-7950201

Proteins

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Function

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1 Pathways

Data Source: KEGG

Identifier Name
04626 Plant-pathogen interaction

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Expression

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Interactions

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Stocks

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Other

12 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from GOC GO annotations assigned by the GO Consortium 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139