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Gene : AT1G27595 A. thaliana

Gene ID  ? AT1G27595
Brief Description  symplekin  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? CONTAINS InterPro DOMAIN/s: Symplekin tight junction protein C-terminal (InterPro:IPR022075); BEST Arabidopsis thaliana protein match is: HEAT repeat-containing protein (TAIR:AT5G01400.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a protein of unknown function containing a Symplekin C domain that is involved in negative regulation of glucose response. Mutants show increased sensitivity to glucose with a variety of assays.  Source: TAIR, Jun 30, 2015.
  • synonyms:
  • TANG1

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
TANG1, a unique gene, plays an important role in sugar responses in Arabidopsis.[TANG1] 26002908

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G27595 0.5kb upstream 0.5kb upstream 11330   true Chr1: 9591588-9602917
AT1G27595 0.5kb upstream 0.5kb upstream 500   false Chr1: 9591588-9592087
AT1G27595 0.5kb downstream 0.5kb downstream 11330   true Chr1: 9592088-9603417
AT1G27595 0.5kb downstream 0.5kb downstream 500   false Chr1: 9602918-9603417
AT1G27595 1.0kb upstream 1.0kb upstream 11830   true Chr1: 9591088-9602917
AT1G27595 1.0kb upstream 1.0kb upstream 1000   false Chr1: 9591088-9592087
AT1G27595 1.0kb downstream 1.0kb downstream 11830   true Chr1: 9592088-9603917
AT1G27595 1.0kb downstream 1.0kb downstream 1000   false Chr1: 9602918-9603917
AT1G27595 3.0kb upstream 3.0kb upstream 13830   true Chr1: 9589088-9602917
AT1G27595 3.0kb upstream 3.0kb upstream 3000   false Chr1: 9589088-9592087
AT1G27595 3.0kb downstream 3.0kb downstream 13830   true Chr1: 9592088-9605917
AT1G27595 3.0kb downstream 3.0kb downstream 3000   false Chr1: 9602918-9605917

Proteins

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Function

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1 Pathways

Data Source: KEGG

Identifier Name
03015 mRNA surveillance pathway

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Expression

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Interactions

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Stocks

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016