help  | faq  | software  | ARAPORT

Gene : QQT2 A. thaliana

Gene ID  ? AT4G21800
Brief Description  P-loop containing nucleoside triphosphate hydrolases superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? quatre-quart2 (QQT2); FUNCTIONS IN: nucleotide binding, ATP binding; INVOLVED IN: embryo development, cell division; LOCATED IN: microtubule; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function, ATP binding (InterPro:IPR004130); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G12790.5).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes QQT2. Required for early embryo development. qqt1 mutant lines are embryo-defective. Participates in the organization of microtubules during cell division. Interacts with QQT1 (encoded by AT5G22370).  Source: TAIR, Jun 30, 2015.
Name  ? quatre-quart2

Locus History Displayer

Publication Counts Displayer

0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

Sequence Feature Displayer

Gene Structure Displayer

J Browse Displayer

Overlapping Features Displayer

12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT4G21800 0.5kb upstream 0.5kb upstream 2857   true Chr4: 11572289-11575145
AT4G21800 0.5kb upstream 0.5kb upstream 500   false Chr4: 11572289-11572788
AT4G21800 0.5kb downstream 0.5kb downstream 2857   true Chr4: 11572789-11575645
AT4G21800 0.5kb downstream 0.5kb downstream 500   false Chr4: 11575146-11575645
AT4G21800 1.0kb upstream 1.0kb upstream 3357   true Chr4: 11571789-11575145
AT4G21800 1.0kb upstream 1.0kb upstream 1000   false Chr4: 11571789-11572788
AT4G21800 1.0kb downstream 1.0kb downstream 3357   true Chr4: 11572789-11576145
AT4G21800 1.0kb downstream 1.0kb downstream 1000   false Chr4: 11575146-11576145
AT4G21800 3.0kb upstream 3.0kb upstream 5357   true Chr4: 11569789-11575145
AT4G21800 3.0kb upstream 3.0kb upstream 3000   false Chr4: 11569789-11572788
AT4G21800 3.0kb downstream 3.0kb downstream 5357   true Chr4: 11572789-11578145
AT4G21800 3.0kb downstream 3.0kb downstream 3000   false Chr4: 11575146-11578145

Proteins

Protein Displayer


Function

Gene Ontology Displayer

0 Pathways

Data Source: KEGG

Gene --> Ontology term

Gene --> Pathways


Expression

Plant Ontology Displayer

Bar Efp Browser Displayer

Array Expression

RNA-seq Expression

Co-expression

Save / Export

 

 

 

 



Interactions

Cytoscape Network Displayer


Homology

Homologue Displayer

Phytomine Ortholog Displayer


Stocks

Alelle Table Displayer

Stock Gene Table Displayer


 

Other

10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from InterPro    
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139