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Gene : CML43 A. thaliana

Gene ID  ? AT5G44460
Brief Description  calmodulin like 43  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? calmodulin like 43 (CML43); FUNCTIONS IN: calcium ion binding; INVOLVED IN: response to cadmium ion; EXPRESSED IN: root, cultured cell; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin like 42 (TAIR:AT4G20780.1).  Source: TAIR, Jun 30, 2015.
Name  ? calmodulin like 43

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2 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
The functional role of CML42 and CML43 in A. thaliana infected with P. syringae is reported. 16240180
CML43 functions as a Ca(2+) sensor in root tips during both normal growth and plant immune response. 24102643


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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G44460 0.5kb upstream 0.5kb upstream 1509   true Chr5: 17916493-17918001
AT5G44460 0.5kb upstream 0.5kb upstream 500   false Chr5: 17916493-17916992
AT5G44460 0.5kb downstream 0.5kb downstream 1509   true Chr5: 17916993-17918501
AT5G44460 0.5kb downstream 0.5kb downstream 500   false Chr5: 17918002-17918501
AT5G44460 1.0kb upstream 1.0kb upstream 2009   true Chr5: 17915993-17918001
AT5G44460 1.0kb upstream 1.0kb upstream 1000   false Chr5: 17915993-17916992
AT5G44460 1.0kb downstream 1.0kb downstream 2009   true Chr5: 17916993-17919001
AT5G44460 1.0kb downstream 1.0kb downstream 1000   false Chr5: 17918002-17919001
AT5G44460 3.0kb upstream 3.0kb upstream 4009   true Chr5: 17913993-17918001
AT5G44460 3.0kb upstream 3.0kb upstream 3000   false Chr5: 17913993-17916992
AT5G44460 3.0kb downstream 3.0kb downstream 4009   true Chr5: 17916993-17921001
AT5G44460 3.0kb downstream 3.0kb downstream 3000   false Chr5: 17918002-17921001


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1 Pathways

Data Source: KEGG

Identifier Name
04626 Plant-pathogen interaction

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from GOC GO annotations assigned by the GO Consortium 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016