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Gene : HSP81-2 A. thaliana

Gene ID  ? AT5G56030
Brief Description  heat shock protein 81-2  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? heat shock protein 81-2 (HSP81-2); FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: in 9 processes; LOCATED IN: cytosol, mitochondrion, cell wall, nucleus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chaperone protein htpG (InterPro:IPR001404), Heat shock protein Hsp90, conserved site (InterPro:IPR019805), Heat shock protein Hsp90, C-terminal (InterPro:IPR020576), Heat shock protein Hsp90, N-terminal (InterPro:IPR020575), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), ATPase-like, ATP-binding domain (InterPro:IPR003594); BEST Arabidopsis thaliana protein match is: heat shock protein 81-3 (TAIR:AT5G56010.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? A member of heat shock protein 90 (HSP90) gene family. Expressed in all tissues and abundant in root apical meristem, pollen and tapetum. Expression is NOT heat-induced but induced by IAA and NaCl. Interacts with HsfA1d in the cytosol and the nucleus and negatively regulates HsfA1d. Did not bind to AtHsfA4c.  Source: TAIR, Jun 30, 2015.
Name  ? heat shock protein 81-2
  • synonyms:
  • heat shock protein 81.2,
  • EARLY-RESPONSIVE TO DEHYDRATION 8,
  • HEAT SHOCK PROTEIN 90.2,
  • HSP90.2,
  • AtHsp90.2,
  • HSP81.2,
  • ERD8,
  • HEAT SHOCK PROTEIN 90.2

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4 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
The regulation of AtHSP90-1 and AtHSP90-3 proteins during seed development in A. thaliana. [HSP90-3] 15582930
HSP90.2 is involved in the heat shock response in A. thaliana. It interacts with AtHsfA7a and AtHsfB1 but only weakly interacts or does not interact with AtHsfA4c. 17965410
Nuclear magnetic resonance spectroscopy and mutational analysis of HSP90 revealed the nature of its binding with the CS domain of SGT1 which is required for innate immunity in plants and animals. [HSP90] 18833289
Results show that the induction expression of ABA-responsive genes under salt and drought stress was delayed by constitutive overexpression of cytosolic AtHsp90.2, but was hardly affected by that of organellar AtHsp90.5 and AtHsp90.7. 19148673

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G56030 0.5kb upstream 0.5kb upstream 3699   true Chr5: 22685973-22689671
AT5G56030 0.5kb upstream 0.5kb upstream 500   false Chr5: 22685973-22686472
AT5G56030 0.5kb downstream 0.5kb downstream 3699   true Chr5: 22686473-22690171
AT5G56030 0.5kb downstream 0.5kb downstream 500   false Chr5: 22689672-22690171
AT5G56030 1.0kb upstream 1.0kb upstream 4199   true Chr5: 22685473-22689671
AT5G56030 1.0kb upstream 1.0kb upstream 1000   false Chr5: 22685473-22686472
AT5G56030 1.0kb downstream 1.0kb downstream 4199   true Chr5: 22686473-22690671
AT5G56030 1.0kb downstream 1.0kb downstream 1000   false Chr5: 22689672-22690671
AT5G56030 3.0kb upstream 3.0kb upstream 6199   true Chr5: 22683473-22689671
AT5G56030 3.0kb upstream 3.0kb upstream 3000   false Chr5: 22683473-22686472
AT5G56030 3.0kb downstream 3.0kb downstream 6199   true Chr5: 22686473-22692671
AT5G56030 3.0kb downstream 3.0kb downstream 3000   false Chr5: 22689672-22692671

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2 Pathways

Data Source: KEGG

Identifier Name
04626 Plant-pathogen interaction
04141 Protein processing in endoplasmic reticulum

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12 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139