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Gene : Hsp81.4 A. thaliana

Gene ID  ? AT5G56000
Brief Description  HEAT SHOCK PROTEIN 81.4  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? HEAT SHOCK PROTEIN 81.4 (Hsp81.4); FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: protein folding, response to stress; LOCATED IN: cytosol, apoplast, cell wall, nucleus, plasma membrane; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Chaperone protein htpG (InterPro:IPR001404), Heat shock protein Hsp90, conserved site (InterPro:IPR019805), Heat shock protein Hsp90, C-terminal (InterPro:IPR020576), Heat shock protein Hsp90, N-terminal (InterPro:IPR020575), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), ATPase-like, ATP-binding domain (InterPro:IPR003594); BEST Arabidopsis thaliana protein match is: heat shock protein 81-3 (TAIR:AT5G56010.1).  Source: TAIR, Jun 30, 2015.
  • synonyms:
  • AtHsp90.4

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI


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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G56000 0.5kb upstream 0.5kb upstream 3315   true Chr5: 22677338-22680652
AT5G56000 0.5kb upstream 0.5kb upstream 500   false Chr5: 22680153-22680652
AT5G56000 0.5kb downstream 0.5kb downstream 3315   true Chr5: 22676838-22680152
AT5G56000 0.5kb downstream 0.5kb downstream 500   false Chr5: 22676838-22677337
AT5G56000 1.0kb upstream 1.0kb upstream 3815   true Chr5: 22677338-22681152
AT5G56000 1.0kb upstream 1.0kb upstream 1000   false Chr5: 22680153-22681152
AT5G56000 1.0kb downstream 1.0kb downstream 3815   true Chr5: 22676338-22680152
AT5G56000 1.0kb downstream 1.0kb downstream 1000   false Chr5: 22676338-22677337
AT5G56000 3.0kb upstream 3.0kb upstream 5815   true Chr5: 22677338-22683152
AT5G56000 3.0kb upstream 3.0kb upstream 3000   false Chr5: 22680153-22683152
AT5G56000 3.0kb downstream 3.0kb downstream 5815   true Chr5: 22674338-22680152
AT5G56000 3.0kb downstream 3.0kb downstream 3000   false Chr5: 22674338-22677337


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2 Pathways

Data Source: KEGG

Identifier Name
04626 Plant-pathogen interaction
04141 Protein processing in endoplasmic reticulum

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139