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Gene : SAP18 A. thaliana

Gene ID  ? AT2G45640
Brief Description  SIN3 associated polypeptide P18  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? SIN3 associated polypeptide P18 (SAP18); FUNCTIONS IN: protein binding, transcription regulator activity; INVOLVED IN: response to salt stress, response to abscisic acid stimulus; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sin3 associated polypeptide p18 (InterPro:IPR010516), Histone deacetylase complex, SAP18 subunit (InterPro:IPR017250).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Involved in the regulation of salt stress. Expression of AtSAP18 is induced by NaCl, cold, drought, ABA, and ethylene treatment. AtSAP18 and HDA19 associate with ERF3 and ERF4 both in vitro and in vivo.  Source: TAIR, Jun 30, 2015.
Name  ? SIN3 associated polypeptide P18
  • synonyms:
  • SIN3 ASSOCIATED POLYPEPTIDE 18,
  • ATSAP18

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT2G45640 0.5kb upstream 0.5kb upstream 2444   true Chr2: 18799528-18801971
AT2G45640 0.5kb upstream 0.5kb upstream 500   false Chr2: 18801472-18801971
AT2G45640 0.5kb downstream 0.5kb downstream 2444   true Chr2: 18799028-18801471
AT2G45640 0.5kb downstream 0.5kb downstream 500   false Chr2: 18799028-18799527
AT2G45640 1.0kb upstream 1.0kb upstream 2944   true Chr2: 18799528-18802471
AT2G45640 1.0kb upstream 1.0kb upstream 1000   false Chr2: 18801472-18802471
AT2G45640 1.0kb downstream 1.0kb downstream 2944   true Chr2: 18798528-18801471
AT2G45640 1.0kb downstream 1.0kb downstream 1000   false Chr2: 18798528-18799527
AT2G45640 3.0kb upstream 3.0kb upstream 4944   true Chr2: 18799528-18804471
AT2G45640 3.0kb upstream 3.0kb upstream 3000   false Chr2: 18801472-18804471
AT2G45640 3.0kb downstream 3.0kb downstream 4944   true Chr2: 18796528-18801471
AT2G45640 3.0kb downstream 3.0kb downstream 3000   false Chr2: 18796528-18799527

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2 Pathways

Data Source: KEGG

Identifier Name
03015 mRNA surveillance pathway
03013 RNA transport

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139