help  | faq  | software  | ARAPORT

Gene : AT4G39680 A. thaliana

Gene ID  ? AT4G39680
Brief Description  SAP domain-containing protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? SAP domain-containing protein; FUNCTIONS IN: DNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus, chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding SAP (InterPro:IPR003034).  Source: TAIR, Jun 30, 2015.

Locus History Displayer

Publication Counts Displayer

0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

Sequence Feature Displayer

Gene Structure Displayer

J Browse Displayer

Overlapping Features Displayer

12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT4G39680 0.5kb upstream 0.5kb upstream 3803   true Chr4: 18414306-18418108
AT4G39680 0.5kb upstream 0.5kb upstream 500   false Chr4: 18417609-18418108
AT4G39680 0.5kb downstream 0.5kb downstream 3803   true Chr4: 18413806-18417608
AT4G39680 0.5kb downstream 0.5kb downstream 500   false Chr4: 18413806-18414305
AT4G39680 1.0kb upstream 1.0kb upstream 4303   true Chr4: 18414306-18418608
AT4G39680 1.0kb upstream 1.0kb upstream 1000   false Chr4: 18417609-18418608
AT4G39680 1.0kb downstream 1.0kb downstream 4303   true Chr4: 18413306-18417608
AT4G39680 1.0kb downstream 1.0kb downstream 1000   false Chr4: 18413306-18414305
AT4G39680 3.0kb upstream 3.0kb upstream 6303   true Chr4: 18414306-18420608
AT4G39680 3.0kb upstream 3.0kb upstream 3000   false Chr4: 18417609-18420608
AT4G39680 3.0kb downstream 3.0kb downstream 6303   true Chr4: 18411306-18417608
AT4G39680 3.0kb downstream 3.0kb downstream 3000   false Chr4: 18411306-18414305

Proteins

Protein Displayer


Function

Gene Ontology Displayer

3 Pathways

Data Source: KEGG

Identifier Name
03015 mRNA surveillance pathway
03040 Spliceosome
03013 RNA transport

Gene --> Ontology term

Gene --> Pathways


Expression

Plant Ontology Displayer

Bar Efp Browser Displayer

Array Expression

RNA-seq Expression

Co-expression

Save / Export

 

 

 

 



Interactions

Cytoscape Network Displayer


Homology

Homologue Displayer

Phytomine Ortholog Displayer


Stocks

Alelle Table Displayer

Stock Gene Table Displayer


 

Other

9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from InterPro    
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0