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Gene : CPSF100 A. thaliana

Gene ID  ? AT5G23880
Brief Description  cleavage and polyadenylation specificity factor 100  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? cleavage and polyadenylation specificity factor 100 (CPSF100); FUNCTIONS IN: protein binding, DNA binding; INVOLVED IN: mRNA cleavage, mRNA polyadenylation, posttranscriptional gene silencing by RNA, embryo development ending in seed dormancy; LOCATED IN: mRNA cleavage and polyadenylation specificity factor complex, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta-Casp domain (InterPro:IPR022712), RNA-metabolising metallo-beta-lactamase (InterPro:IPR011108), Beta-lactamase-like (InterPro:IPR001279); BEST Arabidopsis thaliana protein match is: cleavage and polyadenylation specificity factor 73-I (TAIR:AT1G61010.3).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a protein similar to the 100kD subunit of cleavage and polyadenylation specificity factor (CPSF), the factor responsible for the recognition of the AAUAAA motif during mRNA polyadenylation. The protein interacts with a portion of a nuclear poly(A) polymerase. It is likely to be a part of the mRNA 3'end formation apparatus.  Source: TAIR, Jun 30, 2015.
Name  ? cleavage and polyadenylation specificity factor 100
  • synonyms:
  • EMBRYO DEFECTIVE 1265,
  • CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100,
  • EMB1265,
  • ESP5,
  • ATCPSF100,
  • ENHANCED SILENCING PHENOTYPE 5

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G23880 0.5kb upstream 0.5kb upstream 6527   true Chr5: 8051939-8058465
AT5G23880 0.5kb upstream 0.5kb upstream 500   false Chr5: 8051939-8052438
AT5G23880 0.5kb downstream 0.5kb downstream 6527   true Chr5: 8052439-8058965
AT5G23880 0.5kb downstream 0.5kb downstream 500   false Chr5: 8058466-8058965
AT5G23880 1.0kb upstream 1.0kb upstream 7027   true Chr5: 8051439-8058465
AT5G23880 1.0kb upstream 1.0kb upstream 1000   false Chr5: 8051439-8052438
AT5G23880 1.0kb downstream 1.0kb downstream 7027   true Chr5: 8052439-8059465
AT5G23880 1.0kb downstream 1.0kb downstream 1000   false Chr5: 8058466-8059465
AT5G23880 3.0kb upstream 3.0kb upstream 9027   true Chr5: 8049439-8058465
AT5G23880 3.0kb upstream 3.0kb upstream 3000   false Chr5: 8049439-8052438
AT5G23880 3.0kb downstream 3.0kb downstream 9027   true Chr5: 8052439-8061465
AT5G23880 3.0kb downstream 3.0kb downstream 3000   false Chr5: 8058466-8061465

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1 Pathways

Data Source: KEGG

Identifier Name
03015 mRNA surveillance pathway

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139