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Gene : AT3G58390 A. thaliana

Gene ID  ? AT3G58390
Brief Description  Eukaryotic release factor 1 (eRF1) family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Eukaryotic release factor 1 (eRF1) family protein; FUNCTIONS IN: translation release factor activity; INVOLVED IN: translational termination, translation; EXPRESSED IN: sperm cell, cultured cell; CONTAINS InterPro DOMAIN/s: eRF1 domain 2 (InterPro:IPR005141), eRF1 domain 3 (InterPro:IPR005142), eRF1 domain 1 (InterPro:IPR005140), Probable translation factor pelota (InterPro:IPR004405); BEST Arabidopsis thaliana protein match is: Eukaryotic release factor 1 (eRF1) family protein (TAIR:AT4G27650.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G58390 0.5kb upstream 0.5kb upstream 1805   true Chr3: 21600030-21601834
AT3G58390 0.5kb upstream 0.5kb upstream 500   false Chr3: 21601335-21601834
AT3G58390 0.5kb downstream 0.5kb downstream 1805   true Chr3: 21599530-21601334
AT3G58390 0.5kb downstream 0.5kb downstream 500   false Chr3: 21599530-21600029
AT3G58390 1.0kb upstream 1.0kb upstream 2305   true Chr3: 21600030-21602334
AT3G58390 1.0kb upstream 1.0kb upstream 1000   false Chr3: 21601335-21602334
AT3G58390 1.0kb downstream 1.0kb downstream 2305   true Chr3: 21599030-21601334
AT3G58390 1.0kb downstream 1.0kb downstream 1000   false Chr3: 21599030-21600029
AT3G58390 3.0kb upstream 3.0kb upstream 4305   true Chr3: 21600030-21604334
AT3G58390 3.0kb upstream 3.0kb upstream 3000   false Chr3: 21601335-21604334
AT3G58390 3.0kb downstream 3.0kb downstream 4305   true Chr3: 21597030-21601334
AT3G58390 3.0kb downstream 3.0kb downstream 3000   false Chr3: 21597030-21600029

Proteins

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1 Pathways

Data Source: KEGG

Identifier Name
03015 mRNA surveillance pathway

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Expression

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0